Array 1 63770-63091 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMY02000055.1 Leptospira kirschneri str. H1 ctg7180000004984, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 63769 37 100.0 34 ..................................... TATTTATCTCCATCTCTTCATTCAAAAGTTTAAT 63698 37 100.0 34 ..................................... TTTTTTAATGCACTCATTCCAACGTCCCCGTTTC 63627 37 100.0 36 ..................................... TGAAACTATTACATTTGTAAACGTTTATGAAAAAAC 63554 37 100.0 34 ..................................... CGCCTTTTCGCTTAACCAGCTCCGAAGAATTTGT 63483 37 100.0 33 ..................................... TTCATAAACAACAACAATCCACCAATAGCAACC 63413 37 100.0 35 ..................................... GATTCCTAAATCCGTTTAACACAATACTCAATATA 63341 37 97.3 34 ...................T................. TTTGATTTTTATCAATGCCTTCATACAAACACCT 63270 37 100.0 36 ..................................... GGTTTCATCGCGGCCCTACGCTCGCCTTCGTCGTAA 63197 37 97.3 33 ...................T................. TACAATGTTCGCAAATCATTTCAGTTGATTTAA 63127 37 78.4 0 ..........................AAAGAAC..G. | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 97.3 34 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : AAAGCCAATAAAGCTTTTATAATATATAATTTTTCGACCTATCAAGCCGC # Right flank : CAAAGCCAATCCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCTTCTGAACTTGAAAAGAGCGAGTTCGGCCGAGAAAAAATTCTCTAAAAGTATGATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATCGATATGTAAAGTTCAGATTTCAACTTTTTTCAGAAAAATGAATCATGTTCAAACTCACGTTAGTATAAAATCAATTTTAAGGTAGATCCCCACTTTGTAACATGAACAAAAAAGTGTACTCAGACACATGAAAATAATACGATTCTAATATTTATCTCAAAACTTAAAATGTGGGAACTAACACAAATTATAAGAGCTTTTACACTTTCACAAATAATACACTGCTCATTTTTGATGCCATTTTCATAATAATTTAACATGGGTTTGGCGTAAAAGATTCATTTTATAAAAACCTAATCTTTCTATAAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : GTTCTTTCTCTTCTTTAAATGGAGAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 17595-17924 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMY02000045.1 Leptospira kirschneri str. H1 ctg7180000004952, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 17595 36 91.7 37 T..G.T.............................. ATATGAGTTTTACTGATTTTTTAAATTACCATCGAAT TG [17601] 17670 36 100.0 36 .................................... GTTAATCTCGGGCCATTCCGGGGGTAATATCAATTA 17742 36 100.0 36 .................................... GTTAATCTCGGGCCATTCCGGGGGTAATATCAATTA 17814 36 100.0 38 .................................... AGTAGTTGACGCATAAACGTAATACCAAAGAGCATCCG 17888 36 88.9 0 ..............................ACC.T. | A [17921] ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 96.1 37 GTGCTCAACGCCTTACGGCATCAAAGTTAAGTTCAG # Left flank : GGGCGAATCCGGCGCTGCCGGACCGCGCTTTCAGCTCCGATCAACAAATTGGGGGGTTTGTTTGAAAACAAAATCTTTTCATGAATTCAATTTGTTGATCCCGCCTCAATCGCTTTCGCATCGGATGATACCGAAAACAAGTTAACCGGCACATTGTCGTAATATTTACAGAAAGTCTCGAAACCCATTCTACTTTACCAAAAAGTCAAGTTGGTAAATCAACGTCTCACTACTATTGGCGCTCGGTTTTACTACGCAAAAGTGCCTTCGGTTTAACTCAATCTCACTCCCTATGAGTCGTTCGATATGCTCCGCTATCTAAGGCTATCTCGCTTCCTATCATAACCAACCCCACAAGTATTTGGATCTCAATATTAAATCTGTGGGAATTACGACAAAACCTCTGTAAAACTCAGCGAATGCCTCTCTAAGGATCGGCATTCAGGAAAGCGTTTTGCTTTAGTTCAATTTTGATTCTAAAATCCTATTCAACTTGTGGG # Right flank : GTATTTTCAAATGGAATTTGAAAGGAACTGTATTCAATGCTCTAAAGACATAAATTAAATATTCGCGACCGCCAAAAAGGACGAATGCTATCGTTAAAATCGTGTTGGTGCTTTAAGGTGTAATAGTTAGAACTTGATCTTACACTCCTTAAAATAAATAAGGAGAAAAAGATGACAACAGGACAAAAAATAATCAAGAACAAGGTTGGACTTTTGAAGTTAGCGGAGACGTTGGGGAACGTCTCAAAGGCGTGTAACGTGATGGGCTATTCCAGAGATAGCTTTTATCGTTTTCAAGAGTTATACGAGAAAGGAGGCGAACTCGCTCTCCAGGATCTAAGCAGACGTAAACCGAATCCTAAGAATCGTATCGAACCTGAAAAAGAAGAAGCGGTAAAGAAAATGGCGATCGACTTTCCCGCTTACGGTCAACAAAGAGCATCGAATGAATTGAAAAAACAAGGGATCATAGTCGCCCCTGCTACGGTAAGAAGTGTATG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTACGGCATCAAAGTTAAGTTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 63999-61526 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMY02000050.1 Leptospira kirschneri str. H1 ctg7180000005010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 63998 37 100.0 35 ..................................... TGAAAGTGAATGGTGCCCGTTTCCCTGCTATAATT 63926 37 100.0 36 ..................................... ACAACGGGGAATATTACCACAACGGAACCGGCGTAG 63853 37 100.0 35 ..................................... AATTCAATTCCGCTTTTGATAATCTATGTTCTTGG 63781 37 100.0 36 ..................................... TCTCTAAGGTCTTATCGGCACTTATAGACTGTATGT 63708 37 100.0 36 ..................................... AAAAGCTGTCGCGCAAGCATTCGGTTCTTTGAACAA 63635 37 100.0 34 ..................................... GTTGTCAGTGGCCACCGTCGTTTGAGCTCGATGA 63564 37 100.0 34 ..................................... TTATTCTCTGGCTTGATCGGCATTTTGCGTCCTC 63493 37 100.0 36 ..................................... TGACCTCGGTCATGTTCGATTGTGGGATCTCCTCAA 63420 37 100.0 33 ..................................... CTAAACTTAGAATTTGAGCCAAGAATAGATTTC 63350 37 100.0 33 ..................................... ATATTTGGCAATCGCTTGGGTCAGTTCCCCTAA 63280 37 100.0 34 ..................................... ATTTATCCTAGTAAGGAATTTTACAACCTAGTTG 63209 37 100.0 35 ..................................... TTTTTGAGATTTTTTATTATCTCGTGTGATTCTTG 63137 37 100.0 34 ..................................... TGGTTGTCGTCTAAAATCACTCGTTATACAGGAC 63066 37 100.0 34 ..................................... TTCTTCAGGTTTAGCTGAAGCTTTTGCAGCTTGT 62995 37 100.0 33 ..................................... AAAAGACCAGCAGCAGCATGACGAACGAACAAT 62925 37 97.3 34 ................G.................... ATCCTAACGGTAATAATGATTCTAACATTAAATT 62854 37 97.3 34 ................G.................... TCTGGAATCAATTGATATGCGTAAACTCCCAATA 62783 37 97.3 35 ................G.................... AATATATCCTAATATTAAATTGTCCGGATTAAAAA 62711 37 97.3 35 ................G.................... GCATGAATCAATATATACGACTTAAATCGACTAAT 62639 37 97.3 34 ................G.................... TATTTGTGCAATTATTCGCGAAGTGAATTTCGGA 62568 37 97.3 34 ................G.................... ATTCTGAAAATGTTAGCTTACTGAAAGAGAAATC 62497 37 100.0 36 ..................................... CCAGAGTAAGCCAGGCTTTTGCCAAATATTGACGTT 62424 37 100.0 34 ..................................... ATTGCCATAGGAGCGGCGGCCATTGCGGCTTGAA 62353 37 100.0 35 ..................................... CTTGCCGCCGCGTCTCAGATGCACGGAAACGAATA 62281 37 100.0 36 ..................................... TGAGTCGGATGCAGAGGCCGAAGGAATCCAGTTTAT 62208 37 100.0 35 ..................................... TAAAAGTATTCCATACGCAAGTCGGTTTAACGAAT 62136 37 97.3 33 ......................A.............. TGTACAGTATCGACCACCCTGTTAAAAGAAAAT 62066 37 100.0 34 ..................................... TTTGATAACGTGGTTTAAAGTTGCAACCGCAATT 61995 37 100.0 35 ..................................... GATTTGTATAACTTTGTCCGAGCACTTCCGTATTA 61923 37 100.0 35 ..................................... TTGTGCCTTACTTTGATTCTCCGGCAAAATAAAAC 61851 37 97.3 33 ................G.................... AGTAATAGATTCGATCATGTGCAACCTTCCTTA 61781 37 100.0 34 ..................................... TCGATGATGGGCCTATGATCATTCTCTTGGTCTC 61710 37 97.3 38 ................G.................... ACGTCTCCGTCGCACCCCAAGGTATTAAAGCGAAGAGG 61635 37 97.3 35 ................G.................... GAGCTCGGCGTAGTGATCACTCTACGTGACTTAGC A [61610] 61562 36 86.5 0 ...........................T.-.CA...A | G [61536] ========== ====== ====== ====== ===================================== ====================================== ================== 35 37 98.8 35 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTGGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATTTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTTCGGCCGGTTCGCGTTTAAACGTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAGAGCTTTTTCTAATCCATAAACTTGCACCTTTTCGGCCGCT # Right flank : AACGATTTATTTAAAAAAAAATTTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATTCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTTAATAAACCATTGTTAAACTTTACAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTAAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 102581-102184 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMY02000050.1 Leptospira kirschneri str. H1 ctg7180000005010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 102580 37 100.0 34 ..................................... CAACTTACAAAAACGAACGGAACTTTCCCGATAT 102509 37 100.0 37 ..................................... TCCAATCTCCTTGAAGTCAGAATACCTTGATCATTAC 102435 37 100.0 36 ..................................... GATCTCCTTGCTGCAAATAAGCGTGTTCGTGAATTA 102362 37 100.0 34 ..................................... TTGGTGAAAAGGGTCGGTGGAAGACGACGATATT 102291 37 100.0 33 ..................................... CTCACGTTTACGGATTTAGAATCAGATTGGGAA 102221 36 78.4 0 ..........A..G...G..G....C....A.-...G | TT [102193] ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 96.4 35 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTATAGAGAATTTTACTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTGCTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGGCCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTGGCTTAACAATTGTACAGTATGGTAAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : TGTCTAAAATTTTGTTCCTGAAACGGAGATACTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGAATTGATTGCTCGGAACAATAATTTCTAAGTTTTGTGAGAGCTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAAAATAGGAGTTCCTTTTTATTTTTACGGACCAAAGTTTCTCTTTCGGAGAATATCTGGTTTGGTAAATTCTACCATGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAAATTAAGTCTTTTTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTCATAAAATCGGGGCGAATCCCGCTGCGCTTTCCGCTATAGTTAATAAATTGTATAAAAAAACATAATATGATATTTCGTCTTAAGTTACAATTGATTATAGAACCCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 139802-139190 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMY02000040.1 Leptospira kirschneri str. H1 ctg7180000004989, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 139801 37 100.0 35 ..................................... AAAATGTTGATCTATTGCTGAAGAACCATATATTC 139729 37 100.0 34 ..................................... AAGAAGTGCAGAATCTACCACACTTTGACTTGCA 139658 37 100.0 33 ..................................... AAAACCGCGCGGTATTTCTCGAACGCACCGGAA 139588 37 100.0 34 ..................................... ACTTCTGTAGCTGGAGAAGAAGCCATTGCTGATA 139517 37 100.0 36 ..................................... CTATGCTCGCAAATCTTAACGCAAATCTGAATAAGA 139444 37 100.0 36 ..................................... TTAGAGAGGATACAGGAGACCTCTTTTCTGGAACTT 139371 37 100.0 37 ..................................... TTACACTGGTGGAAATATCCCTGATTTTCAGCAGCAA 139297 37 100.0 34 ..................................... ATAATCATGGATCTCAGTCCGTTGATAAACTCAA 139226 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 100.0 35 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : AGTTCGGCTGAGTAAATATTTTTATAAAAGTATGAGTTCCTACAATTTTAGAAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATTTTTGCGGGGGCTTTTGAGCCGCT # Right flank : AGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTTCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGACAGGCCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTTAACATTCTAAATTTCAAATGAAAGTATGAAATTTTCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTTTAAAAAACGAACCTTTATAAAATTACAAATTTTAGCTACGCACATTCCACATAACGACCGTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAATATAAAATATTTTTTTTCCTCCGTTGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 42639-43828 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMY02000036.1 Leptospira kirschneri str. H1 ctg7180000005001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 42639 37 100.0 34 ..................................... CATAAATTTTATGAGCTAATCTAACATCAACCAT 42710 37 100.0 35 ..................................... CATTATTACATAGACCGAAGTTTTTAAAAGAAAGA 42782 37 100.0 36 ..................................... AATGTTGTTAACGGATTCGGACTGACAGACGGAGAG 42855 37 100.0 34 ..................................... TCTTTCGATTTTAGTATCCATCTCTTTTAAAAAT 42926 37 100.0 35 ..................................... CATAAAATACTTTACTTTCATTTTCATTGAATTTG 42998 37 100.0 34 ..................................... ACTGTGAGGATTTGCTTTATCAAAAAAATCTCCA 43069 37 100.0 36 ..................................... TGGTCTTAATTTCTTATCAGATGCATCTTTAACAAT 43142 37 100.0 35 ..................................... TTATCGATTATTGCAATGTCTTCAAAGACAGTTTG 43214 37 100.0 33 ..................................... TCGGTCCGCATTGTCAAAAAACACAGTTGTAAA 43284 37 100.0 37 ..................................... TCGATCTAAGAATTTGTCCTCGGACGATGTCATTTAG 43358 37 100.0 35 ..................................... CGGAAATCTCAATAACCAAGAAACGACAGTGCTGT 43430 37 100.0 35 ..................................... AGAGTGAAAAGGTAAGTATTTAAATGCTGGCATAT 43502 37 100.0 34 ..................................... CAAACGTATTAAAGATCTTAGTCTGCATCTCATT 43573 37 97.3 34 ...................T................. AAAGGAAGAATAGAAGGATTTGTATCTGTGTCGT 43644 37 100.0 34 ..................................... AGATACAAGGTCGACTCCGTATGCGGTTGAAATA 43715 37 100.0 34 ..................................... CCGCAATCGTTCCGCGGACAACGTCGTAAGACAT 43786 37 94.6 0 ..........................A........G. | AA,ACAA [43812,43817] ========== ====== ====== ====== ===================================== ===================================== ================== 17 37 99.5 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : TGATTCCGAAGATGCGCGTAAAAAAAATAGAAGGGTCAATTTTATCATTCTGAAGAAAAGTAAGTAAAACTTTTCTATATTTTAGATATTTAATAGAGTTGTTGAAAAATTCCATAGTGAAGATTCGTAAAATTGCTTCAATTGTCCATTCCAATCAGATCAAGAATTAATTTTCCAACAACTCTATAATTCAAAATACGAAACACAGTGTTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCGACCTATCAAGCCGCT # Right flank : CCAATCTAGAATAAAGTTGTTGAAAAATGAATTCTTGATCTGTTTCTATTTCATGGAAATGAGCAATTGAAATAGTTTTGTTAAACGCCACTATGGAATTTTTTTCAACAACTATAATTCTGAAAAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATGTGGAACTACTGCAAAATTTCGTTCGGAAAAGTATGATTTAAAATCGCAAAAAAGATAAAAAGAGACGTAATCCGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTATCGTATTCAAGTGTGGAACTACTGGTAAATCCACGATTTGTATGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTTTCTATCCTCTGGACGCTAAATCGATACGAGGGAACTTTAGCAGAACGTTCTCTCAAATAAAAGACGAGATATTGTATTAGGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGCGCGGTCCTGCAAAGCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 2230-1558 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMY02000017.1 Leptospira kirschneri str. H1 ctg7180000004955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2229 37 100.0 35 ..................................... ACAGCTAATTCTTTGATACTTTTTAAATCTGGAAA 2157 37 100.0 37 ..................................... AACGCAATCTACGAACAAGTTCCTACAACACCGACTC 2083 37 100.0 34 ..................................... TTCATTAAGAAGAACTTTAGGATTATCAAACCAA 2012 37 100.0 35 ..................................... ATTGCTAACTCGTGGAGTTCCGTTGGCACCGTTTG 1940 37 100.0 34 ..................................... CGCGTTTCGCCCGCACAAACTCTCGAATGTATTC 1869 37 100.0 36 ..................................... CGAATCCAGATTTTCCCGACGTCGCTTTATTACCGT 1796 37 100.0 35 ..................................... TTTTTCCGACAGCCCTTTTTTATACTGAAATTTAT 1724 37 100.0 36 ..................................... TCTCCTTAGCGGTTTGAAATGCTCTTCGATCCACAA 1651 37 78.4 17 ..................CT.....T.TT....GG.T CGATTTCTAAGACATGC G,TC [1614,1622] Deletion [1598] 1594 36 73.0 0 ........T...A...G.C.T.-.GT.C....T.... | G [1561] ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 95.1 33 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : TATTCAGAACCATACAATCAATTTCCCAGCATTTTATTTTTAAACAGGGTTTTGCAGTAAAACTTACAGCTCTCAATTTTTTAGAACTAAAGCAGAATGCTCTTTATGGATTGGGTTCTTTTTATATAGTCATAAAGTAAGAGAAAATTTCCATACTCTATAAAATGAGTTTTTGAGACCGAATTTTTACTAAACGTTTAAATCAATCTTCTGAAAATTCATTCCTAGATATTCATCTACTTAGGCTTAAAACTAAAAAGTTTATAGTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATGAAGCGCTTTTTGCGAACCTGTTTCTCCCGATCAATTGCGGCCCATTCGCGCTCAAACGAATAGCCACCGCTTAGCGGTTGAACAGCTTTGCTTAACATTTATACAGTATGGCGTCAGTAGGTTCGCAATAATTATGTCTAGAAAAACTAATAAATCTTTTCCTAATACATCAATTAGAGCCTGTGCAGCCGCT # Right flank : TTTCTGAATTTATTTATAAAAATCACAGGTTGAATAAATTCCGATATTCAGCTTTTTATGATAAATTTCAGGTTTATAAAATGAATTGATTCAATCCAAGTTCTTTAAAACTACAGCAAATCTTTATTTAAGGAAAGGATACAAAAGACCGAAAGCGGCAAAATCTCTAGACTTTCTTCTTCTTGGAAAACAATTGTTAATTAATTTTTTAGATAATTATAATATACTTGATTAGAATTTCTAAAAATTTTTATTTTACCGCTCTATAATCAAAACGTACCACAACTCAATTTTCTCCAGTTAACTTACAGGTGTCTCAAAACCAAATCGCACTTTATCAGAAAGATCAAGCTGGATAAAGAAAGTGCCTCACTTCCATTGGCGCTCGACAAATTCTTATTATATTAAATTACGTTATCGCAAGGTTTTATTCTTTACCTTGAAAAAAGAATTTAAAATAAACGAACATGAAATTTTTTATCAGTTCCGAAATCGACGGA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 128405-127555 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMY02000067.1 Leptospira kirschneri str. H1 ctg7180000004986, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 128404 37 100.0 35 ..................................... ATTTAATCGACTATCAGCATCGATTAAAGAAACAA 128332 37 100.0 36 ..................................... AATTATCGTCGCATTAACGTATTATAATATATTCAC 128259 37 100.0 33 ..................................... TTTTTCAAACGCCTGATGAACCGTCATCTTATC 128189 37 100.0 35 ..................................... TTTAAGAAATTCGCTTCGTCTATCATTGATCGTCT 128117 37 100.0 34 ..................................... CGAAACGTTAGAATTCAAACGGGAAATTTTAAAT 128046 37 100.0 34 ..................................... TGGCTCCGAACCTCCTTGCGCTTTTTGAGCATTA 127975 37 100.0 34 ..................................... AAATTTACCCTGAACACAAAGCATAGGAGGAAGT 127904 37 97.3 35 .....................A............... GTTAAAACTTAAATCGCACTCCTCTATTATACGAT 127832 37 100.0 34 ..................................... TTCTATCTCCGTATTTGGATCCAACGTAACAACA 127761 37 100.0 134 ..................................... TTTGTGGGCGGTCTTACGACCATATTTGCCTACTCCATTAGAATGGAAACGACAAGCTATGTGACATATTTAACTAATTTTAATTTTTTCTTTTTAGCAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGAC 127590 36 70.3 0 C......T..C.A.CG....-.A....AAG....... | ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 11 37 97.1 44 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : AAAACCTTGTTATGTTTTTATCCCAAATGTTATAGTGTAAATTCTACTTCGATAAGCATATATTCTGAAATACAATCCATTTAGAACTTCTATATTTTTAGAAACAGATTCAGTTTAGACAAAATTCTGTACGCTCTGATTCTATGGTTTCTGAGTGAGTTAAGTTTTCAAGTCCAGCGCTTGGACAATCGTCTCAACAAGAATGAAAGAACCCTTGAATTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAGTCGCTTTTTGCGAACCTGTTTCTCCCGATCTTTTGCAGCCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTCGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TACCACGGTCTTACGACCATATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTAAAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGACTTGAGACGCAGAAATTCCCAAAAATCAAGTCGGCCTGGATTATTTAACTTTTTGCGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACGTTACGCGAAATGGATCAACGCGGGGAACTTTAACAGAACGCTCTTTCAAACCAAAGCGTCTCACTTACTGAATGCCGATCTTTAGAGAATCATTCGCTGAGTTTTCTGGATCGTTAGACGGTATCGTGTTCTATAATCAGGTGAATTAGCGCGAAAGGGATCGATGCGGGGTTAATAAATTGCGACTTAAGACGATATGTTGCATTACATTTCCTGCATGCAATTTATT # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.95, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //