Array 1 579-2821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWVC03000109.1 Acinetobacter baumannii strain UH535_423 contig109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 579 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 639 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 699 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 759 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 819 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 879 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 939 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 999 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 1059 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 1119 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 1179 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 1239 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 1299 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 1359 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 1419 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 1479 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 1539 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 1599 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 1659 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 1719 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 1779 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 1839 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 1899 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 1959 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 2019 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 2079 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 2139 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 2199 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 2259 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 2319 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 2379 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 2439 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 2499 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 2559 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 2619 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 2674 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 2734 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 2795 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4624-8733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWVC03000017.1 Acinetobacter baumannii strain UH535_423 contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4624 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 4684 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 4744 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 4804 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 4864 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 4924 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 4984 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 5044 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 5104 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 5164 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 5224 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 5284 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 5344 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 5404 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 5464 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 5524 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 5584 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 5646 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 5706 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 5766 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 5826 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 5886 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 5946 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 6006 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 6066 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 6126 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 6186 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 6246 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 6306 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 6366 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 6426 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 6486 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 6546 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 6606 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 6666 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 6726 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 6786 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 6846 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 6906 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 6966 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 7026 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 7086 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 7146 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 7206 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 7266 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 7326 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 7386 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 7446 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 7506 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 7566 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 7626 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 7686 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 7746 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 7806 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 7866 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 7926 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 7986 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 8046 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 8106 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 8166 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 8226 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 8286 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 8346 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 8406 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 8466 28 89.3 32 ....T.......AT.............. ATCATCAATAAGTTGGCCTTGATTTAAATAGT 8526 28 89.3 32 ....T.......AT.............. AGATACAAACGAGTTCGCATCTCGACCAGAAG 8586 28 89.3 32 ....T.......AT.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 8646 28 89.3 32 ....T.......AT.............. TCAACCTGAACACAGACATACATGTTCTATTG 8706 28 78.6 0 ...GC.......AT..........AT.. | ========== ====== ====== ====== ============================ ================================== ================== 69 28 94.4 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //