Array 1 162373-162640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJP01000004.1 Pectobacterium brasiliense strain Y60 Y60.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 162373 28 89.3 32 A..T.......G................ TCGGGCCACGGCTTCTGATTCTTTATCTGGCA 162433 28 100.0 32 ............................ ACTATTGAACAACTTGAGCGAGAAGGACAATT 162493 28 100.0 32 ............................ GAAAACATTCCCGGCGTATCAACTGACACAAC 162553 28 96.4 32 .............C.............. TGGGAAATCAACATTCCGTCGTCATCGTTGCA 162613 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AACCGACGGATGTCGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTACTGGTCTTGCGCGGCATCGGGTTTCTGTTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGTCTGGTGCAAATCGGCATCAGCGCCCTGTGGCGGATTCAATATTGGCAGGAGTATGAAAACGACAATTTGATACTCTCCCCGATGCCCGGTGAACTGTATGTTTCCATGCTGGTGGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACACGCGCGGCGCAACCCAGTCGCTCAACACCCAACCTATGCTAAAGCCGTCGCCGCATTGCTGCTCGTTGCGCTTTATCTGGCGCTTCCGCTACATCTCTACCTGCGTGAACCTCTCCCCTACTGCGCCTTTAGCCCTGACGGACAGCAGTTAAGCATATGTCTGGGAGACAATGACGAGCGGATTATTGTGGAGTGATGG # Right flank : AATAAAACGCACCCAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGGTGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCTCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 172755-169004 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJP01000004.1 Pectobacterium brasiliense strain Y60 Y60.scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 172754 28 100.0 32 ............................ AGATGAAGCAGCAGAGTACGAAAAAGAAAGCG 172694 28 100.0 32 ............................ TCAGATACGCTACAACGAGGACAACATAGCAA 172634 28 100.0 32 ............................ GCCAAAATCAACCATCCGGCGTTCAGGCATGA 172574 28 100.0 32 ............................ TATCAGACCGAATGCCATCAAATCATCGTAGC 172514 28 100.0 32 ............................ GGAATCGGTGGCGATCGCAATGAAGCCGTTAA 172454 28 100.0 32 ............................ CACGAAAGTTATCGAACTTGTAAAGCAAGAAT 172394 28 100.0 32 ............................ TGAATTTTTGAAAGCGGGGTTCGTTAGCTCAT 172334 28 100.0 32 ............................ AGAACACGATTGGCGATTGCGTGATTTGAACC 172274 28 100.0 32 ............................ ACAACGGAAGAGGCTCTTTGCATCCGGCCTTT 172214 28 100.0 32 ............................ AGCAGGAACGTTGAGCGAGATACCCTATCTTT 172154 28 100.0 33 ............................ ACGAACATCAAGGCTAAATCAGATGAGCGACAA 172093 28 100.0 32 ............................ CGAGAACAACACGGCATCCTTTCTCAAATGCA 172033 28 100.0 32 ............................ GCTCGCTGTGATTAAAAAAGGTGAAAATAAAT 171973 28 100.0 32 ............................ TGATAGCCCATACCCTGATAGAGCACGGCGTT 171913 28 100.0 32 ............................ GGTGGTTGTGCGTCAGTTCGGTAATAGCACTG 171853 28 100.0 32 ............................ AGCTTGAACGCTAATGTTGACCGGGATATTCA 171793 28 100.0 32 ............................ AACTGGCAGCGCGATAGCACAGAGCTGACCAT 171733 28 100.0 32 ............................ GCCACGACCCCGCGCTACGAGCCTTCGCGGTA 171673 28 100.0 32 ............................ AAAATCATGCGGCCGACGAACAGACGCGGGGT 171613 28 100.0 32 ............................ AGACAGTCTCTCTACACCGTCCACCGGTTCCC 171553 28 100.0 32 ............................ GTCATGCTGACATCATTCCTGCATTGGTCGCA 171493 28 100.0 32 ............................ ACTCGTCGGTGACGGGTTGCAATTCAGTGTTT 171433 28 100.0 32 ............................ TGCTGCGATATTGCTGCCGAGTGCCTCACCTG 171373 28 100.0 32 ............................ AACTTGCGCATTACCGACGTCGGCCGGAAACT 171313 28 100.0 32 ............................ ATCAAACGGCCAGAATCGGCCGCAACGATAGA 171253 28 100.0 32 ............................ GTGGTTTCCAGCGGCAACTTGTACCGGCGTGA 171193 28 100.0 32 ............................ AGAACAGTGGAAGCATCAAGACGAAGCGAACC 171133 28 100.0 32 ............................ TTGGCCAATGCCAAGGCTTGAACCAATGCCAG 171073 28 100.0 32 ............................ AGCAATTTTAATAGCGGTATTATTGTCCATTC 171013 28 100.0 32 ............................ TGTTGGCTCTCTCGATTTCGAGTGGTTTCAAG 170953 28 100.0 32 ............................ ATTCATTAAGATTAGGGAACGCATTTTCGAGA 170893 28 100.0 32 ............................ ATTTACCCACATCTTCACAATCTAAAGGCATT 170833 28 100.0 32 ............................ GAGCCTCTCAGCGAGTTGAAGACCGTTGGCAC 170773 28 100.0 32 ............................ AACCCTCACCAGCGCTGAACGGGAAAGACTAA 170713 28 100.0 32 ............................ ACCAGCAGCGATACGGCAACTATGCCAAACCA 170653 28 100.0 33 ............................ GCCGTGACCCTTATGTGTGTCCTGCTGGTGTAC 170592 28 100.0 32 ............................ GTATACGTTCTTCCCTCATCAGCGATCGTATT 170532 28 100.0 32 ............................ ATGAATTAAGCAGCGTGGAAATCATCGAATTA 170472 28 100.0 32 ............................ TGCGACGCAGCCAGATTTCGACCGCCTGATGA 170412 28 100.0 32 ............................ GATGGCGGCCAGTGAAAAATCACCGCGATATC 170352 28 100.0 32 ............................ CCCTGAACCAATAATGTGAAGAGATTACGACG 170292 28 100.0 32 ............................ CGCCATGATAGCGGGAAAAATAACGCTTACAC 170232 28 100.0 32 ............................ TGCGTCGCAGCCAGATTTCAACCGCCTGATGC 170172 28 100.0 32 ............................ AATATCCAGAACTGGCACCGGACGCCCCATAT 170112 28 100.0 32 ............................ ATCGAAAGAAAGCATCGTCAGACGTCTGAATT 170052 28 100.0 32 ............................ CGTTCAAAGATGAATCGTGTTGGAAAAAAGCC 169992 28 100.0 32 ............................ CGCTGGGAGAGTTTGCCGTCGTCGGTGAACAT 169932 28 96.4 32 ...........C................ TTTGACGTAGTGTGATAATCGAAATGCGCGTG 169872 28 96.4 32 ...........C................ TGGATACTTTATGGTGATGACGAACAAACACC 169812 28 96.4 32 ...........C................ CGACAGCTTTTTACTCTCGGTTTGCACCGCCT 169752 28 100.0 32 ............................ GATTCCAGCGCTCGTCTGCAATCTCAAGACGA 169692 28 100.0 32 ............................ AACCAGCGTAATGCCAGTGCGCAGCAGGGACA 169632 28 96.4 32 ....................T....... CCTGACGATTTTAATGTCAGCACCGTAAGTGG 169572 28 92.9 32 ...........C...T............ TCGTATAATCACACCGATCAGTATCGGCTTTG 169512 28 92.9 33 ........T..C................ ACGTTTTGAACGGCTCCTCTTTGTTTGCGATGA 169451 28 96.4 32 .............C.............. GTCAGCAATGCTGAAAAAGAACGTTTAGCTAG 169391 28 96.4 32 ...........C................ ATTGCCTTGCAACAAGCTCTGATTGCCGTGGC 169331 28 100.0 32 ............................ GCGTAAATCGACGGCGGCGAAAGCATCACGAA 169271 28 96.4 32 ..................C......... ACAGCATGCACATTGCTGTGATTTCACCCAAC 169211 28 96.4 32 .............C.............. ATGAACGTATCGAGAATGTCGTCGTTTTTGTG 169151 28 92.9 32 ...........C.C.............. AAGACTGGTGATGCCAGAACCAAATCGGGCAT 169091 28 92.9 32 ...........GG............... ATGCTGCTATTAGGCGAGATAGTTATGAATAC 169031 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 63 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACAGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGATTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCACGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : CTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAGCACTATCGTCAGTATTTGATGCGTTATCGTCGTTAAATAACGTGTTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTTTTGCAGACGTTATGCACGCCCAACCCTAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGACCCTGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 181738-183086 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJP01000004.1 Pectobacterium brasiliense strain Y60 Y60.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 181738 28 100.0 33 ............................ CCGGAGATGACGTGCATCCAGAATATCCACAAT 181799 28 100.0 32 ............................ ACACCGCCGATGGTGTTGAAGATGGCATGTCT 181859 28 100.0 32 ............................ CGTTGGGGTTGATGGCATTGAGCGGGCGGAAA 181919 28 100.0 32 ............................ AACAAATCCTGGCGGGTGGCGTAGCCCATCAT 181979 28 100.0 32 ............................ AGCAATTTTAATAGCGGTATTATTGTCCATTC 182039 28 100.0 32 ............................ CTTCGCTAACGATTGGAGCCGACTTATAAATC 182099 28 100.0 32 ............................ CGCAGCATGATTGCAGCTGTGGCGGGGCTGAG 182159 28 100.0 32 ............................ AGTGCCGTGCCGCTATCACGCAGGCGGGCATT 182219 28 100.0 32 ............................ AACAAACAGGCGCGGCGTGATTTTCTCATCGC 182279 28 100.0 32 ............................ AAGGCGCTCTATCATGCGCGTAAATCAACCCC 182339 28 100.0 32 ............................ TTGTGTGAGACCACCAAGGGAATCAAAAAGAC 182399 28 100.0 32 ............................ GAGAATACGGCGGTTATCCATCACAATGATTT 182459 28 100.0 32 ............................ ACAGGTGGCCTGCCTGTTCTGCTGGGCTGGTT 182519 28 100.0 32 ............................ ACTTATCTGCTGGCCGACATAAACACCGACTT 182579 28 100.0 32 ............................ GTGCAAAAGTGCCCAGACACCAGAACCCCAGC 182639 28 100.0 32 ............................ AGCGCGCCCGGTCTCAATCGGCTCCGCATTGA 182699 28 96.4 32 ...........C................ CGAGCAACACAGTATTCATCGCTGTGGAAAAT 182759 28 92.9 32 A..........C................ GGCTTGCGGATGCTACTGCCGATTTCGTAAAA 182819 28 96.4 32 ...........G................ GCATTGGCCATGCACCAGAAGCTGTTACGGAA 182879 28 96.4 32 ...........C................ ATCAGATAATTTCCTCATCAAACAGCAGTTCA 182939 28 92.9 32 ...........C.C.............. ATCGAGGACGAGCTTTGCGCGTCCATTGGATA 182999 28 92.9 32 .......A.........T.......... ATGACTGATTTATTGAGCAAAGAAAGGATGGA 183059 28 75.0 0 ...........C.C.....T..C..TGC | ========== ====== ====== ====== ============================ ================================= ================== 23 28 97.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCCACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGTTAACGGAAGCAGAAGCCGCAGCACGAATTCCCGATGCCGTAGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTATAGAACATGGTCCGCTACAGGATGCTCCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTACCTTGGTTCTGACCCTTTTTTGGCGACCAACTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGCGGTTAGATTAAAAACCTAACC # Right flank : CTTATCGAGATGCGTCGCTGGCGCGACGCATTCTTGAGGACTATTCCCCGTGGAGGGTGACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCGTTCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGACGCACCGTGTGGTCGGCATTCTCGTTAATCGTTAACGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCCATCTCCCTGCTATCAGGCTTCACGCGCCAGAATCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //