Array 1 82150-81694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIJ010000001.1 Streptomyces murinus strain DSM 41827 Ga0415168_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82149 29 100.0 32 ............................. GACGCCGAACCACATCAGCATGATGATCACGA 82088 29 100.0 32 ............................. GACGGCAGGGCGAGCGAGAGAACCGGAACGAT 82027 29 100.0 32 ............................. TTGAGCCCGAACCCGTAGTCCGTGCTCTCCGG 81966 29 100.0 32 ............................. TCCATCTTCGAGCAGTACTCGTGCCTCGAACT 81905 29 100.0 32 ............................. CGGCCCCGGATCACGGTGTTCGTGGACGAGGG 81844 29 100.0 32 ............................. GGCAACCCCGCACACCACGTCGTCATGTGCAT 81783 29 96.6 32 ..............T.............. CAGCCCCAGCCCGTGGGGAGCCGGTCTTCGCC 81722 29 93.1 0 ..............T.........A.... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CGCCCGAGGCGCTCCCGCAGCATCCGGACGTCACGGAGGCGATCGTCCGGGAGCGACGCCTCCACGATCCCTCCGTCCGCCTCTCCGGCCCCCTCGCCGAAGCCCTCTTCGACCCCGATTTCATCGAGGTCGGCGCCTCCGGGCGGCGGTGGACGCATGCGGAGATGGTCGCCGCCCTGCCCACGCTCCACGGCGGTACCGAGAACAGCACCCCCATCACCGCCGAGCACTTCGAGGGCACGGTCCTCGCTCCCGGAATTGTCCACCTCACCTACGAGACCCGCATCGAGGACCGGCAGGTCCGCCGTTCGTCGATCTGGCGCCGCGACGCCGCTGGGGAATTCCGGCTCTACTACCACCAGGCCACGCCGGTGCCGGACGGGACGCCCCGCCCGTAGGGTCCGTTCTGGGGCCTGTCTGCTCTTTCCCGTCGGGTCGGGTTCGCCCGGCCTGATCCGACGCCAATTGTCAGACAGAACCTAGGAGCCGTACACCTCTGG # Right flank : TGGTTCACAACCGGCCGGAAGTGGCGTGAGGTGGCTTGGAGGGTCAGTTCGCGAAGTTGGTGGCCGGTGGTAGTGATGTCGTATCGGCGCGCGTTATGGAGAGCCGCCTTGGCCAGGGCCTTGCGCCGCTGAAAGTCCCGGCCCATTTCGTCTAGGGCTACGGCCAGCGAGTGCGGGTCGCCAGGAGTGAAGGGGACGCCAGTGTTCCCGAGGATCTCCCTCGTGCCGGGAAGGTCGGAGTAGGCAACCGGAAGTCCGTGGGCTTGGGCTTCAATGAGGACGAGCCCGAAAGCTTCCAGACCTCTGGTTGTGGAGATGAAGGCATCGAAGTCCGGTAAACGGTGCCACAGTTCCGTGCGGGGCAGGAAGGGATCGAACTTGACCCGGTCCTGCAGGCCGAGTTGGACAGCTCTTTGTTGCAGATGTTCCCGCAGGGGTCCTTTGCCGATCACGGTCAGGCAGTGGGGCTGATCGGTGAGAGCGAGGGCTTCGACGGCTGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84693-83687 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIJ010000001.1 Streptomyces murinus strain DSM 41827 Ga0415168_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84692 29 100.0 32 ............................. TGGCAGCGTACAGCGCCGAGTTCCTGCTCACC 84631 29 100.0 32 ............................. TCGTCACCGCCGTCCTCGCGTGGAAGGACCCG 84570 29 100.0 32 ............................. GGCGGGTTGCCACGGTTCGGGGAGCACATGAT 84509 29 100.0 32 ............................. CGGAAGACCTTCCTGACGGCGCCGATCCGACC 84448 29 100.0 32 ............................. TTCGAGACTTCCAGGGGGTGATGCGCGGCCCA 84387 29 100.0 32 ............................. CCCGACGAGACGCCGGGCCGGTTCCGGCTCAA 84326 29 100.0 32 ............................. CACCGTGTATGCGTACGTCACTCCGTTGGCCA 84265 29 96.6 33 ............................A CGGGCCGACGACCGGTGCACCGTTGACGTCGAT 84203 29 100.0 32 ............................. GCGCCTACCACGCCGCTCGCCAGAGCCTGGCA 84142 29 96.6 32 ............................G AGGCTCGGGGGTGGACCGTCTACGCGGACGAG 84081 29 100.0 32 ............................. ATCAGCCTCGCCGAGCTGGTCACCCCCGGGCA 84020 29 100.0 32 ............................. TCCAGCGCCAGGCCTGGAAGCGCGGCTTCGGG 83959 29 100.0 32 ............................. GGCAAGGTGATCACCGGCTCGACCATCCAGAC 83898 29 100.0 32 ............................. TGATGCCGGGAAGCTGCTCCGGGGAGCCGGTG 83837 29 100.0 32 ............................. TCCAGCGCCAGGCCTGGAAGCGCGGCTTCGGG 83776 29 100.0 32 ............................. ACGTCGTGCGAGGCACCGGTGGCCGCGTTGAA 83715 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.6 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GATGGATTCTTCGACTTGCTGTCTGCCGAGTTCCAGGAGAAGCCGCGCCGATTGATCGTGGGGCTTCTGAACTCGAATGTTCTTGCAGGTCGGGATTTGCGCCTGTTCGTCAACACGTCGTGGCATCTTCAGAATGCGACAGAAACGATCGAGTCTGAGGGTGGCGGTGAATGGCAGCTGGAATTCTTCTACTGGGGGTCTTGGTGCCCAGAGGGGGAGTGAGGTTGGCTCTCTGCCCGTGATCGCGTTGTGAGCGATAGCGAACTACAGGCCCCGCCGGAACCTTCCGGTGGGGCCTGTGCGGTGTCTGACGGCAGTAGTTGACGGCAACGTCAGCGGACGCCAGCGGCGCAAGGTGGCGGTTCGTCGCCGTCGGCCCCATTACGATGCTTGCTTGCTGCCAAGGCAGGGGGAAGAGGGGCGATATGGTGCTTTTGCCGGAAACTGTAAAAGTCCACGGAAACGCGTCTGCGGAGCGATAAAGCCGCAGGTCAGAAAGC # Right flank : GTCGTCGCCTCCTAGGACCTGTCTGACAAATGATCTTGGGTGGGTGCGCGGAGCCAGAGAATGAGTGAGGCGAGGTGGACTCCGGCTTTGTAGCGGTCGGCGAGCTTGTCGAAGCGGGTGGCGATCGCGCGGAACTGCTTGAGGCGGTTGAAGCAGCGTTCGACCACGTTGCGGGCTTTGTAGAGCTCTCGGTCGAAGGCAGGCGGCCTGCCGCCGGCCTGTCCGCGCCGCAGGCGGTTGGCCTTCTGATCTGCCCGCTCCGGGATCACCGCCCGGATACCCCTGCGCCGCAGGGACTGGCGGATCGTCCGGGAGGAATACGCCTTGTCCCCGATGACCGCGTCGGGCCTGCGGCGGGGTCGTCCGGCGCCGGCCCGGGGGACCCTCAGCTCCTCCAGGACGGCGTCGAAGACGGTGGAATCGTTGACGTTGCCGGGCGTGACGACGACGGCCAGGGGCAGGCCGCGGCCGTCGCAGGCGAGGTGGATCTTCGTGGTCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 99148-97450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIJ010000001.1 Streptomyces murinus strain DSM 41827 Ga0415168_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 99147 29 100.0 32 ............................. AACGGGCCCTACACGATCAAGTACCTCGCGGG 99086 29 100.0 32 ............................. CTGGTCACCCGACGTCGGCAGGCCGGGGCCCA 99025 29 100.0 32 ............................. GTCGTGCAAGCGAACTACCCGTCCAAACGCCG 98964 29 100.0 32 ............................. CGATCGCCCAGGTCTACTCCCAAGGCCACGTA 98903 29 100.0 32 ............................. GGCGCGACGGCCGACGGGTTCACCCTCTGGTT 98842 29 100.0 32 ............................. ACGACGTAGATTCGTCTCGTCGTTGTCGCGCC 98781 29 100.0 32 ............................. GTCAGAGAGGGGGCACGGGATGCGGCAGGGGT 98720 29 96.6 32 ............................T CCCGGCGGTGCAAGAGCTGTTTCGCCAGGGTG 98659 29 100.0 32 ............................. GCTGGCAATCCAGCTTCGGGCGGAGCCGATGT 98598 29 100.0 32 ............................. CGGGCCGCCGAGGCGGCGTCCCACGCGGGCGC 98537 29 100.0 32 ............................. TGGGACCAGCACCAGGCCGCGTGGTGGACATC 98476 29 100.0 32 ............................. GCCATGACGTAGTGATATCACGTCAGTGATCA 98415 29 100.0 32 ............................. TCCACGTCTTGGAACACCCCGCCCCCACAGGT 98354 29 100.0 32 ............................. CCGCGCGACCGCAAGCGGATCGCGGAGAACAT 98293 29 100.0 32 ............................. GGCTCCGCCTCCACGCCACGGCGGTTGCTGAC 98232 29 100.0 32 ............................. CGGCCGATGCTCAGGTCGCGGTAGATCGGCGA 98171 29 100.0 32 ............................. CCCGGCGAGATTCCGCCCGTTCGGAAAAGTGC 98110 29 100.0 32 ............................. ATCTGGGCCGCGTCCACCGAGTCTTTCCGCGA 98049 29 100.0 32 ............................. GGGGACATCTCCTGGAGCTGCCCCCCTGACTG 97988 29 96.6 32 ..............C.............. GCGGCCACGGTCAGGCGTACCCGGCCCTTCCC 97927 29 96.6 32 ..............C.............. TTCGGGGCGAGCCGGAGGGGTCGTTCGTCCGG 97866 29 96.6 32 ..............C.............. TAGGCTCATCGCAAGGGCGGTGGATTGGCCTC 97805 29 96.6 32 ..............C.............. GTCTGATGCTCCAGCGAGGAACGACTGTCCGG 97744 29 96.6 32 ..............C.............. GAGGAATGAGCACCGATCACCCGTACACCTGG 97683 29 96.6 32 ..............C.............. ACGGCCATCGGCCGTCTGCCCGCGCGCGGTGC 97622 29 96.6 32 ..............C.............. GTCTTCCTGATCGTGCCCATCGAGGTGGCCCT 97561 29 79.3 53 ..........TA.GC...........TT. GGCGTCCGCAGCGATGGTCCCTCGGCCACGATGCCGTCGAGTTCACCCAGGGT 97479 29 79.3 0 ...........AT.C.......GC.A... | A [97455] ========== ====== ====== ====== ============================= ===================================================== ================== 28 29 97.5 33 CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Left flank : CGGCGGCGGCACCGACGACCACGACGCCTACGCCGACGTGGAGCACACCTGGTGACCGTCATCGTCCTGACCAACTGCCCACCCGGCCTGAGAGGCTTCCTCACCCGCTGGCTCTTCGAAATCTCCGCCGGCGTCTTCATCGGCAACCCGTCGGCGCGGATCCGAGACCTACTCTGGGACGAGGTCCAGCAATACGCCCACCAGGGCCGCGCCCTGCTGGCCCACACGACCAACAACGAACAAGGCTTCACCTTCCGCACCCACGACCACGGCTGGCACCCAGTCGACCACGAGGGCCTGACCCTGATCAGACGCCCGAACGCCCAGAAGTCATCGAGCCCCGCGACCACTCCACCCAAAGGCTGGAGCAGCGCGTCCAAACGACGGCGTTTCGGCAGGAAGTAATGAAACACCTAACGTTACTTATGTGCGGTTTGTCGGAATCAGTGAAACTGATGCAGAACCCATTGGTCTCATGACGAAACCGCAGGTCAAGGAGT # Right flank : TGGGCCCCTCCGCGACTCGTAGCCCGCCGCGTGCTGCACCATTGCTCGCACGCTGTCTTGGCACACACACCGTCAAGCCGTCATGGTCGAGTGCCCAGCTGGCGGGGCGACATCGTTTGGGTGAACCCGGCCGATGATCCTCGGTCCTGGTGCCTTCCATCTCTTTCCGGGCTCCAGCCCATGATGCCGAGCAGCAGGCCGTCCAGGAGCCCGCCGACGGACGCGGCATACGTCTCGTGCGGCAGCGGGCCGGGGTAGGAACCGTAAGTAGAGGTTCTTGCAGGAACCGCATTGGCCGGGCGTCCGGACGCTTGCCATCGGCAGCCCGTTCCGTGCGGGAAACTCAAATCTGAGCAAAGCGAGCCGTGGCCGGTGTCACCTCAATTGGCTGGATCCGGAAGACCCATTTGCGCTATCTCCGCCGGAAATTCACTCCTCCGAAAAGGGGCGAAGATCTGTTTCGAGTCCTAGATCCGGCGAATCGCCCGTGCGGCCGAAAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 110042-109464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIJ010000001.1 Streptomyces murinus strain DSM 41827 Ga0415168_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110041 29 100.0 32 ............................. CGTGCCCCGCATCCACCCTCCGCGCGGCCGCG 109980 29 96.6 32 ......................G...... GACACGGCCTCCCAGGCACAGGCATGGCTCGA 109919 29 100.0 32 ............................. TGGGACCAGCACGAGGCCACGTGGTGGACGTC 109858 29 100.0 32 ............................. ACCGCGGTTGCCAGGCGGGGAGTGAGACACCG 109797 29 100.0 32 ............................. TCCGCGTCGATCGAGGACTTCGGCAGCTTGTC 109736 29 96.6 32 ...........A................. ACCAAGCTGAAGCTGCTCCAGCAGCAGGCCAA 109675 29 93.1 32 ...........A..T.............. GACGCGGTCCAGGGCGCGAGCGGACGGATCGG 109614 29 93.1 32 ..........GA................. CAGGGGCGCCCCTTCCACCGACCGCGCAACAG 109553 29 93.1 32 ...........A............A.... AAGACGGCCACCTGGCTGTCGGTCGTCGCGGA 109492 29 82.8 0 ......T.......T......G....TG. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.5 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : TCTGCCCAGCCTGCCTCCACTGGCCGCTCTGCCGCACATGCCCCGGCCCAACCCCCCGGCGCGCCCGCCCCGACAGCGACGGCCGCTGCACCACGTGCGCCTCCGTACCGGTCGGCGAACTGGAAGGAATCAGCCCATGACAGCCACGTCCCACACCCCTTCCCGGCCGAGCGGCATAAGCGGTCCTGCCCAGGAGCGCGCAGTCGGACAGGGTTTGAGGCCGCGGCCTCCAGCACAGCAGCCCGGCGTCCAGTCGGCGCCCTGCTGGAGAAGCCGCATGGCTACAGGAGAACCCTGAGATCCTGGGACCCAAAGCCGTCTCCGCTCGTGCATGGATGAACACCCAGGCAGCCGGACGATGCAGCGGATTTCAGGCCTTCGAATTACGATGCTTGCTTGCTGCCACAGCATGAGGAGGTAGGCGATATGCGGCTTTTGTCGGAAACTGCAAAAGTCCACGAAAGCGCGTCTGTGGAGCGATAAAGCCCCAGGTCAGGAAG # Right flank : GCGTGCATGCCCAAGTCTGTTGAGGGCGGGACTTGTTCGTCCTTGGAAGGATGGTGCTGGCATCCATTGCGTGGCCGGACTGCTCGGGCGTGTTGGGTGGTTTCATGTGCCTCAGGGCTCATCCTCTTCTTCTTTGTATTGGCTTCACTGTCTGCTTGCGCCCTGTATGTATCTGACATGACAGGCGAGGGAGGTGGCCTGGTGGGGCTTCGTGCCTGGCTGGGTGGGCCGGCGTTGAGTGTGTGGGCCAAGCACGATCGTTTTTCGGAAGGATGGCTGCCGTTGTGGCGGCACATGGAGGACAGCGCCGCCGTGGCCGGGCGGTTGTGGGATGAGTGGCTGCCATTGTCGGTGCGGCGGTTGATTGCTGGTGTGCTGCCTGGTGGGGAGGGGGATGCGCGTTACCTGGCGGTGTGGCTGGCCGCTGTGCATGACATCGGAAAGGCGACGCCTGCGTTCGCCTGTCAGGTGGAGCAGCTTGCGCAGGTGATGCGTGGCCA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2537988-2538322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIJ010000002.1 Streptomyces murinus strain DSM 41827 Ga0415168_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2537988 29 100.0 32 ............................. GGTGCCTTGGCCCGGTCGGTCGCCGTGGCCTG 2538049 29 100.0 32 ............................. CAGCAGTGGCGCCGCCGTGTCGTCCACGGGGC 2538110 29 100.0 32 ............................. AACACGCCAGGTGTCGAACCCCCCGGCCGTAA 2538171 29 96.6 32 ........................A.... ATCACACCGGTTGCGGTGCTGCTCCCCGCCAC 2538232 29 96.6 32 .............C............... GACCGCCTCGCCTAACTCTGAAGGACACCCCG 2538293 29 75.9 0 ......TT.AT..C...A..........G | A [2538318] ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.9 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GGGCGGCGGGCACAGTACCCCCTGGGCGGATGCGGGGACCGGAACTTCAGCGCGCGGCTCACTCTGCACGCTCCAGCCACATCTCCCCGAAGCGGACTCGCACAGCGGCCTTCCTCTTTGCCGAGGCCCTGCTCCGCCGCTGACAATCCGACTGCGCCGGCCGTGCGCCAAGGCTGTCCGGCGGGAGATGGCGTACAACCGAATCCGACTGCGTCAGCGTCCGGCATGGCTGTACAGGCGCCCAACGCACTGCTGCTACGACCCACGTGGCAGCCGGGCCAGGAGCTTCACCACGGAGCGCTTACCGATATCTTTCGGGAGACGAATCCCACCAACGGGTCCTATCCATAGGACTGTTGGGTACTACCTCCACCTCCCGCGCCAAGCATGCCCAGCATCTGCGCAGCACCGCACAAACATCCGGAAGAACCGAAATGTCCCCTTCCTCAGAAGTAAGGAGTTCTACCTCCCCACCCCACCAAAACCCCAGCTCACGAACT # Right flank : GGAACGCGGACGTCAGGCGTCGGGCTGCTTCGCGGTCCCGCCTATCAGGGCGATCCGCACACCGACCACCAGCTCGTCCCCGCGTTCCACGAGGTCGTTCCAGATACTGGAGCCTCAGCCTTAGGGCGTTTCCTTCAGATCATCTGATCGTTGGTTGATGTGTGTCGTTGACTGATGCCCAGTGGGCGAGGATCGAGCCGTTGCTGCCGGACCGGACGCGTGATCGCCGGCAGGTGATCGACGCCATCGCCTTCACGTACCGCCCCGGCACGCCGTGGACGGACCTGCCCGAGTACTTCGGCTCGCGAAAGTGCGCCCACAACCGGCTGTGGAAGTGGGCCGCCGACGGCACCCGGGAGAAGCTCCTCACCTCCTTGCTCGCCCAAGCCGACACCGATGGCAACCTCGGCTGGATCGTCGCGGTCGACTCTCCACGATCGCCCGGGCTCATCAGCACGCCGCCGGGGCCCGTCAAAAGGGGCCCCACCCGACGAGCGCTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2549143-2549522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIJ010000002.1 Streptomyces murinus strain DSM 41827 Ga0415168_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2549143 29 100.0 32 ............................. CGCCTCCGGCAAGACCACCGTGACCGGCGGCG 2549204 29 100.0 32 ............................. GACAGCTCCCCCCCCTGCGTCACGGCCGACAG 2549265 29 100.0 32 ............................. GGGACCTGGCTCCTGTTGTCTGACGGATCGTG 2549326 29 100.0 32 ............................. GTCGACTACTGGAAGAACCACGACACCACCTC 2549387 29 100.0 32 ............................. CCGGCGACCTTGTCCCACACGGCCTTGATCCC 2549448 29 96.6 17 .........................C... CTGGGCCAGGAGAGAAG Deletion [2549494] 2549494 29 69.0 0 .C....T...T.TC.......A.C.C.T. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.1 30 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGGCTCGTCGAGGCCGGCCGCAACTACGACGGTCCCGCTGACGAGGAGCCCCTCTGGTGACGGTCATCGTCCTCGCCAACTGTCCACCGGGCCTGCGGGGCTTCTTGACCCGCTGGCTGCTGGAAGTCTCCCCCGGCGTTTTCCTGGGCTCACCCTCGGCCCGGGTACGCGACATCCTGTGGGACGAGGTCCGCCAGTACCGAGGCAAAGGGCGCGCTCTACTCGCCTACCAGACAGACAACGAGCAAGGCTTCACCTTCGCGACCCACGAACACGCGTGGCACCCCACCGATCACGAGGGCCTCGTCCTCCTCAAACGCCCCTCACTCATCACGAACTCGCCGGCACCACCACGGCAGGGCTGGAGCAAGGCCGCCAAAAGACGCCGCTTCGGTAACTCGTGAAGCCTCCCCCCACCTACCAACTTGCCCCGAAATGCCCCTACCCTCGCAAGTAAGGCACACTCCATAACCCACCAACAAAACCCCAGCTCACGAACT # Right flank : CTCTTGCGTGCAATTCTCCGTGGCTCCGCTGTAGGCAGCGGGCGTCGGCATGCGCTGCGTCGGCTCGGTCCCGGCACACCGAACCCCGCCGTACTGTTCCTTGTGTGACCACTCTCGAACGCGCCCGCTGCGAGCTCAAGGCCCACCCCCTCGCGCTCGACGCGGCCCTCGCCGCGGCCGTTCTCGTCTGCATGGTCGCCGGGTCCCTCGCCACTCCCAAGGACGGGCAGGGCGTCACCTGGGGCACCCACGTCCCCGCGCCCCTGAGCCTGCTGCTGATGCTGCTGGCCGCCGTCGCCCTCGTCTTCCGCCGCCGCGCCCCCCGCACCGTCCTCGCCCTCACCGGCACCCTCTCCGTCGTGGAGTGCGTCACCGGCGACCCCCGCGCGCCCGTCACGATGTCCGCCGTCATCGCCCTGTACACCGTCGCCGCCACCACCGACCGCACCACCACCTTCCGCGTCGGCCTGCTCACCATGACCGTGCTGACCGCCGCCGCG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2556630-2556006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIJ010000002.1 Streptomyces murinus strain DSM 41827 Ga0415168_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2556629 29 100.0 32 ............................. ACGAAGTCGAGGCCGCTCGTGCCGTAGACCTC 2556568 29 100.0 32 ............................. TCCCAGCCGGCCTCGATCCGCTCCTGGAGTGC 2556507 29 100.0 32 ............................. GGGGCGTCCACGGAGCTGCTGGTCACCAGCGA 2556446 29 100.0 32 ............................. GTCGGCGCGTCCGTCGGCGTGCGCCTGCTCAA 2556385 29 100.0 32 ............................. GCGTACTGGACGCGCGTCCTCGGCGACGGGGA 2556324 29 100.0 32 ............................. TGACACGCCCGGGACCGACGCAACCGGCCCCG 2556263 29 100.0 32 ............................. GTCAGATCCGCATTGCGGGTATCCGTCATGAG 2556202 29 100.0 32 ............................. CACGGGATGTGCACGATGTCGGCCGGGTCGAC 2556141 29 96.6 32 ............................G GTGGAGCTCTACCCGATCACCTGCGGCGAGCC 2556080 29 89.7 11 ...................A..C...G.. AGGAGGGCGGT A,C,CA,GC [2556051,2556055,2556059,2556065] Deletion [2556041] 2556034 29 75.9 0 .................A...T.CCCT.A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.6 30 GTGATCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : TCCGGCGCACGCTGGGCGCCCTCCTCGACGCGGTCCGCCGACTCGGCACCCCCCTCGCGGACGACGAACTGGAACCCTCCGACCTGATCCTCCCGGCCCCGGACGCCTCCCTGGCGGAGGTCCGCCTGATGCTCAACGAGGACGGCCTGATCCCGGACTGAGCGTCCGGGACCGGGGCCCGGAAACAGCCGTACACCGTGCTGGTGGAACCGTCGCGCAGAAGCCGCGGATCTCCTTTCGGGATCTGACCGGCCGCTGCACCTGGTCCGCACAGCGGGGAGGGTCGGCAGCCAGTGGATGCTGGCGCGAGTGCTTGCAAACACCGTCCGCACGGTGATCACAACCAACCAGCGGGCGCAGCACCGTCGAATGTTTCCGGTACGAACCCGGTCCAGCATCTACCCAGCACCGAATGAACAACAGGAAGAACCGAAATGTCCCCTTCCTGAGAAGTAATGAATTCCGCCCCCCTGCTTCACCAAAACCCCAGCTCACGAACT # Right flank : TTAGCTGTCGCGGGCGGTCGGGTGAATGGGCGCAAGGTCGGACCTTGGATGGCCAGGGCTCGTACTCGCACCAGGGAGGCGCGCATGTTCGCGCGAGAGCGGGCGGGGTGTCACCTGGGAGCAGTCGAGGGAGCCGTGCCGTCAGCAGTCAGGCGATGAGGAGATCCGTGTAGTCGACGAACGTGGTGCTGACGTCATCGATGTCCGCCACGAGACGCAGATGCCCACCCAGAGCCGCGATGTAGGCGGCGATGGACTCGACCTGCATCCGGTCGATGTCGCCGTTCTCCATCTGCGAGACCCGGACCTGCGAGACACCCATCTTGTCGGCCACCTCCGTCTGGGTCAGGCCGCGTCGGCGGCGGAGTTCGGCCAGATGGTGTCCCAACGTGGCCGCCTCCCGGGACGCACGGGCTGCCGCGACGCGTTCGGGCGCGTCGATCCCCGGATCCTCCGACCGCCTGGCGCCGAGCGACGACTCCCACCGGTAGTGCTTACTC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //