Array 1 17838-16680 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXK01000037.1 Neisseria meningitidis strain NM1758, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17837 36 94.4 30 ........G...A....................... AAAACCAACCGGGTATTCATACACAGCCAA 17771 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 17705 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 17639 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17573 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 17507 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 17441 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17375 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17309 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17243 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17177 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 17111 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17045 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 16979 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16913 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 16847 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16781 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 16715 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //