Array 1 695-2116 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWWK01000017.1 Neisseria meningitidis strain INS-Nm1172 NODE_17_length_45194_cov_78.325, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 695 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 761 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 827 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 893 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 959 36 97.2 30 ......................T............. CGATTTACCACCCATAAAACCACCTCAAAA 1025 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1091 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1157 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 1223 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1289 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1355 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1421 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 1487 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 1553 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 1619 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 1685 36 100.0 30 .................................... CTGAAGCTGATGAACGAGCACGTTTTGTGG 1751 36 100.0 30 .................................... CGTAGGGATGTGTGTTAAATCTACCGTTTT 1817 36 100.0 30 .................................... CGCCCCCATGCTGATGGTGCGCCTCGCCGA 1883 36 100.0 30 .................................... ACATCTTCGCCGACATAACCTGCTTCGGTC 1949 36 100.0 30 .................................... CGCCGAAGCCGCCCCAGTAGGCTTTGGGTG 2015 36 100.0 30 .................................... ACCATACCCGAAGTGGAAACGGTTACGCGG 2081 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TTTCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //