Array 1 476476-477723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHY010000003.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-081SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 476476 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 476537 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 476598 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 476659 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 476720 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 476781 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 476842 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 476903 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 476964 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 477025 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 477086 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 477147 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 477208 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 477269 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 477330 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 477391 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 477452 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 477513 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 477574 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 477635 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 477696 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494270-497838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHY010000003.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-081SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 494270 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 494331 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 494392 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 494453 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 494514 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 494575 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 494636 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 494697 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 494758 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 494819 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 494880 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 494941 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 495002 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 495063 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 495124 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 495185 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 495246 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 495307 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 495368 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 495429 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 495490 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 495551 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 495612 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 495673 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 495734 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 495795 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 495856 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 495917 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 495978 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 496039 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 496100 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 496161 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 496222 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 496283 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 496344 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 496405 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 496466 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 496527 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 496588 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 496649 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 496710 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 496771 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 496832 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 496893 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 496954 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 497015 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 497076 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 497137 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 497198 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 497259 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 497320 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 497381 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 497442 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 497503 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 497564 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 497625 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 497686 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 497747 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 497809 29 96.6 0 ............T................ | A [497836] ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //