Array 1 38225-36936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHOB010000017.1 Clostridium perfringens strain P946 CP9-S1-500-103021_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 38224 36 86.1 30 A...ACA...A......................... TAAAGAACCTAAGGTAAAACCTAAAACAAA A,A [38210,38216] 38156 36 100.0 31 .................................... CATACAATAATAGACTGTAATAGTTCCGCAA 38089 36 100.0 30 .................................... ATAGAAAAAAATGCTACTAACATAGATAAA 38023 36 100.0 30 .................................... AATAACTTTATATTCTCTAAATTTGTTGCT 37957 36 100.0 30 .................................... AAAAGGACGAGATAGGATTAAACATACGAG 37891 36 100.0 30 .................................... ATGGAAATATGGGGATTAAGCGAAGGGGTT 37825 36 100.0 30 .................................... TTAGTGGAAGGTCTTAATTCAATTATTGTA 37759 36 100.0 29 .................................... TTAGAATTAGACTGTAAGGAATGTAAAGA 37694 36 100.0 30 .................................... TCCAATGGATATGGAGTATATGCCTAAGGT 37628 36 100.0 30 .................................... GCTGTAGATTATGGAGATTCAAGTATTATA 37562 36 100.0 30 .................................... TTGTTCTTTTAACATTGATGATGGTTGTAT 37496 36 100.0 30 .................................... GCATTTATAATACCTTCCATTTCCCCTGCA 37430 36 100.0 29 .................................... ACAGCTGCTAGAGTATTGGCTCAAAATGG 37365 36 100.0 28 .................................... AGAGCATATAGAAGTTATCGAGGAGGAA 37301 36 100.0 30 .................................... CAGGAATGCAGAGTTTATGTAATTTTATCT 37235 36 100.0 30 .................................... TCTTATATTAACCAATACTTCGATGTTGAA 37169 36 100.0 30 .................................... AACATTTACCATTGATCCTCCTAATGCAAC 37103 36 100.0 30 .................................... TTTTTTCAGGTTCTCATCCTGCGCAAAGAA 37037 36 100.0 30 .................................... TGATAAGTATATTAATCCTAAGAAGATTTT 36971 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.3 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATAATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAAATTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : AGGAAGTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAAAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-96.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //