Array 1 22252-21082 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZZE01000030.1 Neisseria meningitidis strain Neisseria meningitidis isolate R216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 22251 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 22185 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 22119 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 22053 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 21975 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 21909 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 21843 36 100.0 30 .................................... ACGAAGCAAAAGGAATGATTGAACACTACT 21777 36 100.0 30 .................................... AATGTTAAACATTTTGTACGGAAAAAATAA 21711 36 100.0 30 .................................... ATAAAAAATAAAAAAAATCAAAAATAGTAA 21645 36 100.0 30 .................................... TATCTTCCATCGCCCACGTTTCAGGCACGC 21579 36 100.0 30 .................................... CATGGGCATTGGCGGGGGTAATGTGCAGTT 21513 36 100.0 30 .................................... TGATTTCTTCGCCTTTGCGCCATACGCCGA 21447 36 100.0 30 .................................... TTGCTGTTGGTAAAATTGGTGCTTCCTATT 21381 36 100.0 30 .................................... ACGCCATCAGCCAAACCGCCACCGGCGGCT 21315 36 100.0 30 .................................... ATACGAATGTGAACATCTTCAGGAATTTCA 21249 36 100.0 30 .................................... GCGTGTAGCTGTATTTGTCGATGGCGGCTT 21183 36 100.0 30 .................................... TGCTGAACGATGCTGTGAAAAAGGGCGGCA 21117 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 18 36 99.8 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //