Array 1 24-521 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBET01000063.1 Ligilactobacillus salivarius strain CCuG38008 CCuG38008_contig_63, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 .................................... AAGTTGCGTTTAGTTCGTTATTAGACTTAC 90 36 100.0 30 .................................... GGAAAAATGCTTGTTTATACTGCCCGGCTA 156 36 100.0 30 .................................... AAGTTACTAAGGCTTTGTAATGGTGCTTGT 222 36 100.0 30 .................................... TGTGTGGCTTTAACGATAACTCCTTGAGCG 288 36 100.0 30 .................................... TATCCAATGAGGAAAGAAAACATCATCCCA 354 36 100.0 30 .................................... CTGATGTGATAAATCTATTTGTTTTTGTTG 420 36 100.0 30 .................................... TTTTCTTCTTTGTTATCAACAAAATAGTTG 486 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GGTCTTAACCTAATTGATTTAACATCCTTCTGAAAC # Left flank : TTTACCTAATACATTATCTAGTAG # Right flank : CTGATATTTTACCTAATACATTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCTTAACCTAATTGATTTAACATCCTTCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 45156-45324 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBET01000008.1 Ligilactobacillus salivarius strain CCuG38008 CCuG38008_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 45156 37 100.0 29 ..................................... GACTTGCACATTTATATTTGAATGTTGCA 45222 37 100.0 29 ..................................... TTTTTAAAAGAAGTCTTTGAAAAACATAT 45288 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 99.1 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACCA # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : ACTAGATAATGTATTAGGTAAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 25-1300 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBET01000009.1 Ligilactobacillus salivarius strain CCuG38008 CCuG38008_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 25 36 100.0 30 .................................... ATATTTTTACTTGAGTTGCGAAGGGTTGCA 91 36 100.0 30 .................................... AAACACTCCAAGTGTTCAAGCAGCTAGAGG 157 36 100.0 30 .................................... AGATGTTTTAACGTTTATCAACTACAACAG 223 36 100.0 30 .................................... TGCTTTTTCATGGTTTTGGTTCGTTCACGC 289 36 100.0 30 .................................... AGCACGTTTGAACAAGTACGCTAAGCAACG 355 36 100.0 30 .................................... GTATGCAAATCTATAATGCTGCTTATTATA 421 36 100.0 30 .................................... TTAACCATCGCTAACATTGGTCGAGCTACT 487 36 100.0 30 .................................... AAACTGTTTTATTAACGCATTAATGAAGAA 553 36 100.0 30 .................................... GAAATAAAAAAGCCCAGAGCATAAAGCCCT 619 36 100.0 30 .................................... TATCACAGAAAGTTCTCCAGCAACATTATT 685 36 100.0 30 .................................... CGATAAGATTGCAGAAATTACTAACTTGAT 751 36 100.0 30 .................................... GAACCATTTACTTCATACGTGATGTTGGCG 817 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 883 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 949 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 1015 36 86.1 29 ..........T.........T...A......G.T.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC C [1048] 1081 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 1199 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 1265 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 19 36 97.1 33 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : ATAATGTATTAGGTAAAATATCAGG # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //