Array 1 52-818 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000111.1 Brevibacillus sp. CF112 PMI08_contig_136.136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 52 32 100.0 35 ................................ CCGGTTTGCCGGCACTCATGCGATGCTTTTAAGGC 119 32 100.0 35 ................................ AACAAGCCATAATTGATACCGTAACAGATAAAACC 186 32 100.0 35 ................................ CAAACTTTGCAAACTGTGCTGTATAAGCGGCTCGT 253 32 100.0 34 ................................ CTCGCTACCCGCCTCAGCAGACGCTCTACGCACC 319 32 100.0 34 ................................ TCCAATCCACACCTTAGGCACGTTACCTACCATC 385 32 100.0 36 ................................ CCCTTCACGTCCGATACCTTCAAGCGTAGCAGGTCA 453 32 100.0 34 ................................ TACTCAAAAAACCGAATCTGTCCAGACTGTGGAG 519 32 100.0 34 ................................ CAAAGACTGCCGAGCGATAAACGAAGTTCCGTCC 585 32 100.0 36 ................................ AGAACTTCAAGGACGGGGCGCCACCCAACGCGGACG 653 32 100.0 36 ................................ TCACGCGAACCAGGCACCGGCAAGACCACGACGGCC 721 32 100.0 34 ................................ CACCCAAGGGGCAGACCAGTCGCACGATCTTTAG 787 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 100.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATGCGTGGATTGAAATCGAAATGGGTTTAAAATTTATGAACTTGTCCAACCG # Right flank : GCGAACATGACGAAGAACGCGAGCGTACCGGTTGGGTCGCATCCTACGCGGATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55-959 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000102.1 Brevibacillus sp. CF112 PMI08_contig_127.127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 55 36 100.0 36 .................................... TTCCTTCTCAAAATGGCCGTTATCGGCATGTTTCCA 127 36 100.0 39 .................................... GGTGCTATAAATCTACTTAAAGAGTTTGGAGGGCTTAGG 202 36 100.0 36 .................................... TACAGCAGGGCATTTTCGATAGATGCCAACCTATTA 274 36 100.0 34 .................................... GCGTTCTCCTATGAAAAAAGGGCGCTCGGTTGAG 344 36 100.0 35 .................................... CGCAGATTCTTTGCAGCCAGACCTTGCCTTGCATA 415 36 100.0 38 .................................... AAGCCGGCCATGTACACCGGCAGTGAAAGCGATCGACA 489 36 100.0 35 .................................... CAAAATCACTGATTGCAGCGATCTCTTCATACAAC 560 36 100.0 38 .................................... CAAAAACTCATCATATGCGTCCACATTAAGTCTTTGGG 634 36 100.0 35 .................................... TGTCGGGTTATGGCCGATGGATTCGAGCAGGGTGA 705 36 100.0 38 .................................... GACGCGAGATAAAGGTGTGGATGCAGAAAGCGTACGAG 779 36 100.0 39 .................................... AAAGACCGGATTGCGGCGAGAGGAACCGCCAAATGCTCG 854 36 100.0 34 .................................... GTTGCTGATGCCGAGCCTTTTCGCGCGAATCAAG 924 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 100.0 36 GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : TTTCCACTAAGCTTTCGAACGGCACCGTAGTGGCGGTGCGAAACGGGCTATCCGG # Right flank : TGTCATTATCCTTTGTCAAACAGATACGCTTTACACGCGTGCTAATCCCGAAGCTTTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 644-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000116.1 Brevibacillus sp. CF112 PMI08_contig_142.142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 643 32 100.0 35 ................................ TCCTTGCCGCATGCCCGTCATGATCGCCAGATAAG 576 32 100.0 34 ................................ GCCAGCCATTGCAGACGTGCTGCCCTTACTCCAG 510 32 100.0 35 ................................ CGTTGTTTCGTCTGTCATGATCGCGTAGTGGATTT 443 32 100.0 35 ................................ GCGTACCTTGCCAAGCGCAAACGTGACTGCTTCGG 376 32 100.0 35 ................................ TGCGGCGATTTTTTCGCGCAACTCGGCATCTACCT 309 32 100.0 36 ................................ CCGACTTTTGCTAACCGTGACGATGTGAAGGGTAGG 241 32 100.0 36 ................................ CTCGACTTCGTGGGCGCGGTCGATAAACTCGGCAGA 173 32 100.0 36 ................................ ACTGTCTGCTGTCCATTGGTGTGAACGACGTCAACC 105 32 100.0 35 ................................ CAAACAAGCGTACCAGTACCAGTACCAGTTGCTGG 38 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 100.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CGGATGCGTGGATTGAAATCAATTGTGATCTGCGCCGTCTCGATCGCGCCG # Right flank : TCCAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33256-33688 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000128.1 Brevibacillus sp. CF112 PMI08_contig_172.172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 33256 32 100.0 36 ................................ CTTAGCAAGCCACTCTTGTTTGATGCCGCGTTTATC 33324 32 100.0 34 ................................ TCGTACACGATCCGTTCGACCTCCGGCCATTCAT 33390 32 100.0 35 ................................ TGCTCCGGCTGCGATTACTCCACTGACGTAATCAA 33457 32 100.0 34 ................................ TTGTACCCAAGAATACATCCCCATCCAGTTCCAT 33523 32 100.0 34 ................................ TAACGCTGGCGAAATCTTCCGCCTGTTTGAAGTG 33589 32 100.0 36 ................................ ACTTCGTCGAAAGCGTAGCCGATCGGAGTCGGATCA 33657 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 100.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TGGATGAGTATCCTCCTTTTTTGTGGAAGTAGGTGAATGGTGTGCTGGTATTGATCACGTATGATGTGAGCACAGTTAGCAGTGCAGGGCAAAAAAGACTTCGCCGCGTCTCGAAAATATGCCAAAATTACGGTCAACGTGTCCAAAATTCCGTGTTTGAATGCATTGTCGATTCCACACAGCTTACTTCATTGAAGCTGGAATTGCTCTCGATCATCGATCTGGATCAGGATAGCCTCCGTATTTATCAATTAGGCAATCATTACAAGAATAAGGTAGAGCATTTGGGTGTGAAAGAATCAATTGATTTAGAGGGGCCATTGATTTTCTAGTGCGAATGTGAAGCGCACACGAATTCCCTGGGGGATTCGCACCCGAAAAACGGGTTAAAATGCCGTTTTTTGTCTGCTTTCTCTAAATTATCTTAACGTATGAATGAATTTGAGCGTATTTTGATTACAAATATGAAAATGAAAGCATATTTGGGGTGAAAATTCGCT # Right flank : CAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24762-25226 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000158.1 Brevibacillus sp. CF112 PMI08_contig_212.212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 24762 36 75.0 30 ...T....TTTC...G...T...C...T........ GATGAAAAGGAGCATCAAGTTGGACAAGCT A [24779] 24829 36 94.4 38 .......C.A.......................... GCTTACAGCTTCCGGTCAACCCCGCATCCATCCGCATA 24903 36 100.0 34 .................................... TCAAGATCGAGGCACTGTACCCGGGCACGAAAGG 24973 36 100.0 35 .................................... TTAATATCTTGGTTGTAGTTGCGCAAACCTTTTAT 25044 36 100.0 38 .................................... CTTACTCAGTTTGCGTCCTCCGAAGAAGTCGTCCATAA 25118 36 100.0 37 .................................... GCGACACGACCGTATTCGTGGACGAGCCGGTCTTTGT 25191 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 95.6 36 GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : CGCTTGTCCATGACGTTATTTCCTTTCTTTACTAAGTATGATTTTTGAATTTCAAAAAAAATCGAACATCTATAAGGTATAATATACTATCAATACTAACAGCTATCAATTCTTTATTTAAAAGAGAGTAAATGCTTGTTGCATTTTTCTTCATGTACTATACTTACTAATACGAATTATAGGTTCGTCTAACTTTAGTGCGTGTGCATTGGGTGATTCAAACAATCACTTCTCCACTAGAAGCTTATTACAAAGCTTGCACTTTATTTACAAAGAGAAAAGCCAATGCTCTCCCTTTCCAAATGAAACCAGTTTTCTTTTAATCCATTTTTTGCCTGACTGCTTCTTTTTTGCAAGAAAACGTATCGAGCACCTGTAAACCTCTCACTATGACTATTGAATTTGGTATATATTATTATCAAGAGATCAATGATTTTGAAGTTCACTATAGGTTATTTAATAGAAAGATGCCCCTAACGTAAAGCAGGGGCATCTTTGAT # Right flank : | # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 961-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000172.1 Brevibacillus sp. CF112 PMI08_contig_227.227, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 960 36 100.0 36 .................................... CTCCGGGCTATGTAAAAAACCTTTGTGCAAATAACA 888 36 100.0 35 .................................... CTCAGGTCTTATTCCGAGCACTTCTGCCATTTTCG 817 36 100.0 35 .................................... GATGGTGTCACGGAACAAATCTTTCAGCATGGTGT 746 36 100.0 36 .................................... CATGAGCCAATCACGGTCTTTTATGGTAACGGTAAA 674 36 100.0 36 .................................... GGATAGTCAAGGTTGATGTGTCTAAGTTCTTCTATT 602 36 100.0 37 .................................... TTTGGTACGAATGTCATTTCAACTGCTTTTTGACTGG 529 36 100.0 36 .................................... TCAGCGTGTTGATTCGAGTCTGGATGTCCTGGGGTA 457 36 100.0 34 .................................... TCAGAAGATCAATGACTCTTACACTAAACAATAA 387 36 100.0 35 .................................... GATGGTACCTTCAGGCAATCCGCATTGATAACGCG 316 36 100.0 40 .................................... CCGTTGAGGATTTCATCGACCTTTTGTTCGAGGACTTTAC 240 36 100.0 38 .................................... TCGTAATTTTCCCGCGCAAATGCAGTGTGCCCGTCTCG 166 36 100.0 36 .................................... CCTCGTCGACTAGAAACTTCGATCCATCACTGGTGA 94 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 13 36 100.0 36 GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : | # Right flank : CGTAACATTATAATCCTACGCTGACCATCCTTACCCCTCCGTGCTAACCACGAAGCTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1014-720 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000066.1 Brevibacillus sp. CF112 PMI08_contig_74.74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1013 32 100.0 34 ................................ GCCGGGGTTATAGTCGAAGAAAACGAACCCTACG 947 32 100.0 34 ................................ CATGCCAGCAACACACCCATCACGGTCACAGCAG 881 32 100.0 33 ................................ ACACTTCCAGAGGCCAACAGTAATCACAGAAGG 816 32 100.0 33 ................................ ATGTGGTGAAAGGTTTAACTACGTTTTTGTATG 751 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 5 32 100.0 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GGATGCGTGGATTGAAATTCCTCGCGATACCGCACGCCGTCGATGGTCACTA # Right flank : ACGCTAGTAATAGTGCGGTAGGGGTATGTCGTTAGGGTCGCATCCTACGTAAGCGTCAAATAGCCCCCACCTTGTTGCCAAGATGAGGGCTGGTCTATGCTGGGGTCAAGAGTTGAACACGCGGCAAGTTAGCGGTAACGACGGCGACCAAGGCAGCAAACTGTCCAGGGTTTCTGGATTTTTCAGATCAGGAAGCTGTGGGAGCTGCTCGAATAGGTACGTCAAATACTTGAACGGGTTCAGTCCATTCTCCTTTGCTGTTTCGATGACACTGTAGATGATTGCGCTCGCCTTTGCACCGCGAGGCGTATTGGCGAACAGCCAGTTCTTTCGTCCGATCACAAACGGCTTCATCGACCGCTCGCTGCGGTTGTTGTCAATCTCGAGCCGCCCATCCTGCAAAAACGCCGTCAGCTTGTCCCACTGATTCAGGCTGTAGGCAATCGCCTGCCCCAGCAGACTTTTGGGAAGCGTTCGGGGGCGTTGCTGACGCAACCATG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 603-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000072.1 Brevibacillus sp. CF112 PMI08_contig_83.83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 602 36 100.0 37 .................................... TACGGACTGGTTACGCGGTACTCTCGCAGCATGTCGT 529 36 100.0 36 .................................... AGCAATCCGTTGGCGAGCAATCTGTTGGTGAACATT 457 36 100.0 35 .................................... TCAGTGGCTTGATAACAACTACGATCTGAAGGACA 386 36 100.0 41 .................................... ACTTGGCTATGACTTTTTGCTTGTCATGCAGGATGACAAGC 309 36 100.0 35 .................................... TGAGTGCTAATTCGCTTGTGTCTTATATTCTCGGT 238 36 100.0 38 .................................... TCCGGCAACTCCAATCAAGGACGTACAGGACTTGAAAG 164 36 100.0 37 .................................... GCCGTTGCAGCTCCATTGGCTGCGCCACGCTTTGACC 91 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 100.0 37 GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : TTTCCACTAAGCTTTCGAACGTCTTTTTTTATTTGCTTGAACCATTCAAACTTTTTT # Right flank : CGATGGTGAGGGTTGGTTTGCTTTCGGTTGTAGCATTATCGTGCTAACCACGAAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 56-529 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000073.1 Brevibacillus sp. CF112 PMI08_contig_84.84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 56 36 100.0 39 .................................... CAATGATTCCTATGGATTTAGTCGCGGGATATGTTGCAG 131 36 100.0 38 .................................... GGTTGGCTGATCGAAAAATTGAAAGAACATGGTAATAG 205 36 100.0 35 .................................... GTTGGTCGTGGGCTCTCTTGTGCGCACTATCATTC 276 36 100.0 37 .................................... AACCGAACTCCGCTTAGCAATCTACGAGGTCATTTGC 349 36 100.0 37 .................................... CTCTCTCTTTTCTTTATCATGAGACATCAAACAGGAG 422 36 100.0 36 .................................... CTAGCTGGCTCAACAGTTGTTCAACCGATTCCTCCA 494 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 100.0 37 GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : TTTCCACTAAGCTTTCGAACGAATACTTGGCTTCAATCTGTTTCCCTGGATCAATG # Right flank : CCCAGAAACGATCAAACTCTTGTTTGGCTGGAGTAAGGTGCTAACCACGAAGCTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 883-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000074.1 Brevibacillus sp. CF112 PMI08_contig_86.86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 882 32 100.0 34 ................................ AAACATTCCGAAACGTACAAATCAAACGGGTACT 816 32 100.0 36 ................................ CCGTAGAACCGTCGGAAAGAAAGCGTAGTAGGCGCC 748 32 100.0 34 ................................ CGCCACCCTATGTGCCGCCTCGTACGTGTCAAAC 682 32 100.0 35 ................................ CAACGCGCCTTGTTGCTATCGTTAGGGTCGCGATC 615 32 100.0 36 ................................ TTACCCTTGTAGGAGCTTTTGGCGCGGTCATGGCGG 547 32 100.0 36 ................................ TTCCGAGCATGCGGCTGATCGATCTGCACGACGGCA 479 32 100.0 35 ................................ AACGACGGCCTTGGCAACGAGGGATGGTGGGACAC 412 32 100.0 33 ................................ AAGGATCGCTCATCACATAGCGTCGCCGCCAAC 347 32 100.0 33 ................................ AGCTTCCATAAGTTTAGCGATCTGATCGGCGGT 282 32 100.0 35 ................................ GACGATCAGAGCCTGGTCAGAGCCGCGCTGGACGG 215 32 100.0 33 ................................ TTGGCAGCTTTTAACACCTTATGGACGGTTGTC 150 32 100.0 33 ................................ AACCTGAACGACCTGGTCGAGAGAGAAATGTAT 85 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 100.0 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CGGATGCGTGGATTGAAATAAAATCAGGGACATTGACGGTTTGAATTGGGCGTT # Right flank : TGTAGCGATAAATGGTGCATGCATCCTCGTACAAAGTCGCATCCTACGCGGATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7778-8333 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000023.1 Brevibacillus sp. CF112 PMI08_contig_31.31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 7778 38 100.0 37 ...................................... CCGCCAGCCGCCGCGTCCGGGCACGTAGTCGATTCCG 7853 38 100.0 36 ...................................... CCACAACAAAGGAGGCTGTCTCTGATACGCCTGTGA 7927 38 97.4 36 .....................................C GTCTTCGTCACAGTGTCGTAGATGTCTACGAGTCTA 8001 38 100.0 36 ...................................... GGTGAACGGATCGCAAGAGGAAAAGACGGCAAGACG 8075 38 100.0 36 ...................................... GGTAGCATGATCGCTGATAAAGTCCGAGCAGTTACC 8149 38 100.0 35 ...................................... TTAAAAATTTACGTAACCGCAAATCAACTTGCCAA 8222 38 94.7 37 ....................G................G TCTCCACTACGTCCTGCTCGCGTCCGGTTGCGACCTG 8297 37 78.9 0 ..................-A..TA...AA.......TA | ========== ====== ====== ====== ====================================== ===================================== ================== 8 38 96.4 36 GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAACT # Left flank : ACGACATGGGGCCAAAGGCAACTTTTGAGAGTGTCAGCTCTTTCGATGGAACCAGTGCCAAAATGGGCCGGGACCGGATTATGAAAACGGTGTTCATTCCGTATCAACAGAAGCGAGCAAGCAGGGATTTTACTTGGTACACTCGTGAGGAAAGCTGAGCGGTATGGTTGTGGAAGGGGAGGGAGATGAGGTTTGCCTCCCCTTGTTTATGATAGAAAAGCGATGGGCTGTAGTGCTTTGCTTTCGGGAAGAAGGGAGGGTGGGTCTTATAAAAGGGAAGGAAATGATTTATTATGGTCGTAAGGGTACATGATTATACGCCTGAAAGTGAATGCTAATGGCAGGACACAGTCGGTTGCAAGTGGAGAAACAGTGACTTTCGAGGATCGGGCCTGTTTTTGGACAGAAAGGGAATGCTCGAAAATAGTCAAGGATATTGAGAGCTTTGACTGCGAGTGAAGCCTTGGGATTACTGGGTTTGTTCATGCCGGGCGAGGTCG # Right flank : ACCAGAACCAAAATCCTCCTGGTTCCATCAGACAGAGTTGTGTTTAGGACATGAGTGGAACGGTGCAAAACTTGTATTCACCCCCTACTTTTAATAAACGAACAGTTCAGTAAAATGGCTAGGATCGTCCGTCTACTGCGCGGGGCTATGCAGCATCTTAGAATCTCAGCTCAATTTGTGCAATTCATGCTCGTAAACCTGCAAGGCCAGTAAATGGAGCTAGTTTGCATACTTTTCCATAGCTCCACTCTTGCAAAACAAAAGACACATTGGCCAACTGAAGTAGCCCGTCCAACTGATAATTTTCCGTCAGCCGATTTCGATAAAGTTTAAGCCGGCTGACGGCTTTTCAGTTTTCTTCTGCATTTGCACGAAATAATCTATAGGGGCTGAGCGAAAAACGCTCTGAATGGCTATCCTTCTCGTTTTCAATTACGAGCGTATAAACAGGAATGGATTCCTTGCGCGTCCCAGTTGCAAACAGTCGTTCTCCCATAGCA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 9638-10044 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000023.1 Brevibacillus sp. CF112 PMI08_contig_31.31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 9638 37 100.0 37 ..................................... ATGATCTTCTTAACGGCTTTGTCCGAAATCGCATCCG 9712 37 100.0 37 ..................................... AGGCCATTGTCCACCGTTCGGCAGGGATGCTCTCCAG 9786 37 100.0 38 ..................................... CGCCAAAAATCGCCAGTTGGCTGATCGGCAGCACCGTA 9861 37 100.0 36 ..................................... ACGTATTGTGCCACGGGTGAATTTTCCCGTCCGCCT 9934 37 100.0 38 ..................................... GGTTGCTGTTGATACGTCATTGTCGATAGCAGCTCATA 10009 36 91.9 0 ...................A..A..-........... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 98.6 37 GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Left flank : TTCTATCTCTGAGAGGAAGGAACGTTGCAACGGTTCTTGCAGCCTTATAGATAATACCTTCTGATTGTAAAAATTGATTTGTTTGGACGAGTTTCTCTCTTGGTGAATACTGGGATATTCAAAATTCACTTAGAATGCTGAGTCAAGGGAATATTGGGCGATGGATGGGAATGGCTGTTGAAGGGGAAGAGGGGAGGTTGCGGTGTGCCTCCTTAATTAACAAAAGATATTCTGTAGTGATTTCGTTAGGAAACGAGGGAGCAATCTTACAAAAATGAGGCAAATGATTTATTATAGTCGTGAGAGCACATGATTATACTCTTGAAAGTGAATACTAATGGTAGGATACAGCCGGAAAGCAAGTGGAGAAAAAGTGTTTTCGAGGATGAAGCCTGTTTTTGGACAAAAAGATAATCCTCGAAAAAAGAGAGGAATGTTGAAGGCTTTGACTACAAGCAAAGCCCTGGCATGACTGGGTTTGTTCACGCCGACCAAGGTCG # Right flank : CAACAGCATTCTTGATGATCGGGCCAATTTTACGTATCATTACCTTCATTTTTTAACGAAAACCTAATTTTGCAAAAGGCTCAATGATACATCCACTGCTTTTTTCTCGAACGCAGCGTCAAGAGTTCCCCAGACCTTTTCTATAAGAAAACCCCTCATAGTAGACAGAAAAAGCAAGCATGTACTCTGTCTACTATGAGGGAGCATATCATGGACGGCTGGTTATGAATTTATAGTATGTTTCTCAGTCGAGAAGGAATTTTTTTGGAAATCAAGGTTTTGGTGCAGAGACTCGCATAATTCTGTATTTACTTTTTTACAATATGATGACGGAATAACTCATCTCGGGCAGGCACTTCCCGATTCGCTCGGCGATAAGCGTCAGCGATCATTTCACAATAGTGGTCAAACCACTCGCGGTTTATTTGGCAACGGGTAAGCCCCTGATAGATTGGATGATTTGTGATGTCAGGGTTTATCTTCTTTAACTCTTCCAAATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 15363-15621 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKKB01000023.1 Brevibacillus sp. CF112 PMI08_contig_31.31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 15363 37 100.0 37 ..................................... TTCTCTTACTACGTAGTTTATCCGCTGTTTACTTATA 15437 37 100.0 38 ..................................... CTTTATAAAGGAGGACATAACTATGAAAACCTTAAACC 15512 37 100.0 36 ..................................... ACGCTGAAAACTCAGGGTAAAAACCGATGAGGTCAC 15585 37 81.1 0 ........A..AC......AA..A.A........... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 95.3 37 GTTACATTGAGGACCCGAGGTACGAGGGGACTGAAAC # Left flank : TCGGTAACGAGAAGTTTTTTAACCAGGCTGCGAGTGGTATGGCACTGAGCTTGAGGGGAAAAGTCCCGATGGGGTCTTGTTTCTCCAAGAGCAATAGATACGCAGATGAGAGTGAGCAAGAAAGAATCTGAGGAAACAGGAAGAACCTTCGGCGCCATGCTGGGCGATGGGGATGTCTGCCGAAAGGGAAGATGAGAAGTGAGGTGCGTCTTTTTGTGGACAAAAGATATTTTGTCGTGATTTCGGCAGGAAACGAGGGAGAGGTATTATAAAAATGAGGCAAATGATTTATTATAGTCGTGAGAGCACATGATTATACCCCTGCAAGTGAATACTAATGATAGGACTCAGCCGGAAAATAAATGGAGAGAAAGTGTTTTCGAGGATGGGGCCTGTTTTTGGACAGAAAGGTAATCCTCGAAAAAAGTGCGGAATGTTGAGGACTTTGACTACAAGCAAAGCCCTGGCATTACTGAGTTTGTTCATGCCGACCAAGGTCG # Right flank : CCGCTCTAACACAGACTGTTCTGCTTTTTTCGCTTCTGTACATTACGAACCCGAACACGAGTGAACTGCCACAACGAACCAAGTTCTTACGACAAAATGGCAACTGCCTAGAACACCCTAAACCCACAAAATAAGCCTACGAAAAAATTAAACTCATACTGAACAAACCGCAAAGCCCAACATTAAAAAATCCGCCCAACCAAAACCCCAGTTCCGAAACGAGGTGACCAAATGTTCGGATACTTCATCACGTTTGCCCTTAACTTTATAGTGGCCTACTTTATTTACGACGACCCCAGCATCCTGAAGCCTTTCGTGCACTCCGTTTTGATTCTGGCTTTGATCGTCCTCGTGGATCTATTTAAGAAAAAACAAAGAGCCACGCGCTGACTTTCAAGAAGGCAGTATGGAGCGCTAAAACAACTGGAAAGTAAGCAAAATGCCCTAATTCACACTTTTACAATTGTTGTATTTTGGGAACTATCCCGGACTGATCCAAA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGAGGACCCGAGGTACGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //