Array 1 7208-4190 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJBR010000061.1 Lactobacillus amylovorus isolate MGYG-HGUT-00161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 7207 28 100.0 33 ............................ CAAGGCTATCAAGTTTAACCAAGTCGGCACCGG 7146 28 100.0 33 ............................ TTAAAAAACATGAATCTTTCTGAAAAAGACTTT 7085 28 100.0 33 ............................ TAAATTAAAGAAAGCAGACTATGACACTAAGGA 7024 28 100.0 33 ............................ TCTGAGAGATTTTAAGACCGTTCGCATCCCCTA 6963 28 100.0 33 ............................ TTAATCACGCCGTTCGACCAAATCCCAGACCAC 6902 28 100.0 33 ............................ TGCAGTCCTAAAACCAGAACTTTTCGATTATGA 6841 28 100.0 33 ............................ TAACCCAAGTATGCAAGGGGATTGGGACTTAAA 6780 28 100.0 33 ............................ AAGTAGCGACTATCGTTTGAAACTTTACGATTA 6719 28 100.0 33 ............................ TTCTTTTTTCGCTTCATTTGTCAAAAATTTAAG 6658 28 100.0 33 ............................ TTATTAAAGCTCTGAGACGCTCTAAAACCGTCG 6597 28 100.0 33 ............................ TACCTTATGCACGGCGTTAGGGTCGGTATTAAA 6536 28 100.0 33 ............................ CAATTACACCAAAGTTATGCCTGAGGTTTTAAC 6475 28 100.0 33 ............................ TATCCCAGCTTTAGGAATAAGCCAAAACTTAGA 6414 28 100.0 33 ............................ TGAAAAATATAAGCAAATCGGTAATGCTGTTCC 6353 28 100.0 33 ............................ TGATTTTTTATTTGCCATCCTTCAAAAGAATAG 6292 28 100.0 33 ............................ TACGACAAGATATTGGAATTATTGCGCCAGCTT 6231 28 100.0 33 ............................ CACTAAAGTTATTAGCAGAATCAAGAGCCAATT 6170 28 100.0 33 ............................ TAATAGCGCCAACAGGAGCCAGCATAGGTCCAA 6109 28 100.0 33 ............................ TTAGCGACAACGATCCCGAGAAAGCCGTAAAGA 6048 28 100.0 33 ............................ CCAGAGACGGCCGCCCGTACCGTAAAACTTTGG 5987 28 100.0 33 ............................ TCGCACCTCAGCCTCACTGCGCCACACCTGCAA 5926 28 100.0 33 ............................ CCGACCCCGTCGAGGTTCCAGCCGCGGCGTAAG 5865 28 100.0 33 ............................ TTACATGTCATTGAGGCAAAATACGGCAGTATC 5804 28 100.0 33 ............................ TATCTTGATACGTGTTAGGTTGCAGACCCCCTA 5743 28 96.4 33 ...................G........ TATGACATAAACGCCGCCACCCATTTTTGTGTA 5682 28 100.0 33 ............................ TGCTGGAGCAAACGCCCGCCGGACTTAGCGCAG 5621 28 100.0 33 ............................ TGACTACGTTGTGCCGGAAATTGACACCAAAGT 5560 28 100.0 33 ............................ TGCTGGAGCAAACGCCCGCCGGACTTAGCGCAG 5499 28 100.0 33 ............................ CAAGAATATGGTAGGTGTAAGCAATGAAGACAA 5438 28 100.0 33 ............................ TAAACGGATGGTTTTCTCTGAAAAAACATTTCC 5377 28 100.0 33 ............................ TATCTTGCCACAACAGATAACAAACGTGAGCAA 5316 28 100.0 33 ............................ TAATGCTCTCTTAGAATTGTTCTGTATGGTGTT 5255 28 100.0 33 ............................ TAATGCTCTCTTAGAATTGTTCTGTATGGTGTT 5194 28 100.0 33 ............................ TTGTCCCGACTTGGAATTTAAAGCCGCTTGTCT 5133 28 100.0 33 ............................ CATGTAGGCTTTTTCGTCGTCCCAGTATTCGTG 5072 28 100.0 33 ............................ TAATGAGTTTATTAGATGCACTTAACCAATTAA 5011 28 100.0 33 ............................ TAAATGGGATACCGTGATTCCATTGCAACCCCT 4950 28 100.0 34 ............................ CCGCTTGTATACAGTGGGTCATTTGTTTTACGTA 4888 28 100.0 33 ............................ CCATATTCCGACATTATCCGAAGTGGCACAAGT 4827 28 100.0 33 ............................ TTAAAGAAAACGGATTAATCGAACCACTTGTAT 4766 28 100.0 33 ............................ CTCTGCCCCGTTTCTGGAATGATTGACCATTGA 4705 28 100.0 33 ............................ CATCTAAATTAGGTAAGTCTTTCACATCGCCAG 4644 28 100.0 33 ............................ TACCAACCATTACCAGAAATACCTTGCTTGCAA 4583 28 100.0 33 ............................ TACATACTAGAACACCCCGAACGGTTCACACTG 4522 28 100.0 33 ............................ ACAGCGCTACGAATTAGAGCAGAAACAAGAATT 4461 28 100.0 33 ............................ TAAGAACTGAAAAAAAGAAAAAAAGCTTTAAAA 4400 28 100.0 33 ............................ CACTTTGTGTGTTATAATAATGGTGTCAGGAAA 4339 28 100.0 33 ............................ TATATAGTTGTAGAAAGAAATAAGTAAAAAGAA 4278 28 100.0 33 ............................ TAACTCCCGCATAAATCTAACCGTAATAGAGCG 4217 28 78.6 0 ....................A.CA.GTT | ========== ====== ====== ====== ============================ ================================== ================== 50 28 99.5 33 GTGTTCTCCACGTATGTGGAGGTGATCC # Left flank : AGTAGGAGTAAAATAATCTCTATTGGAGCGATTAAGGAAAACTTAAAAGGTGAAGAAGAACAATTTTATCGCTTGATAAAGATAAATGAGGCTATCCCAGAGAAAATTACTGAATTGACAGGATTAACTTCGAAGGTTTTAAATGAACGAGGTGTTACTTTAGAACAAGCTTTAAATGAATTTCGAAAGTTTGTTGGAAGTGAAATGATAGTTGGATACAATTTGTCATTTGACAATAATTTTTTATTGAAAGCATATTTAAGTATTGGACAAAGGGCTCTTGTAAATTCAATGAAAGATCTCATGGGTATAGTTAAAGAAAAAGATATTTTCCTAGATAATTATGACCTTGAAACTGTTTTAAAAGAATATGGGATAAAAAACGATAATAGACATAATGCATTAAGTGATGCTCGAGCCACTTTTAAATTGGCTAAAGAACTGAATAAAAAAGGTTATTTGCAAATTTAAGGATGTTGATATATCAAGGATCTTTTACT # Right flank : TTTAATATGTCAAGTGAGCAACTAATCTACAGGATTTTGTCCTGTAGATTTTTTAATTTTTGTTTGACAATTAAAAGTTTCGAGAGTAAGATAATTAAAAGATTTTGAAAAGCAGATGAATCAATAAGATTTTATTACAGAGAATTGCTGTTAGATGAGAAGCATATAAATGAACTTGATGAACATGGGCTTGGATATCAGTGTTAGCGATATTTAGCTAACAACGGCGTTGTGAACCGTTATACGTCACAAACTATTATTGTAGTTAATGAGATCTGCTGTGTGAGCAGTAGATGAAGTAAAGGTGGTAACACGAAGCACTCGTCCTTTGGGATGAGTGCTTTTTTGCTTTTATTAAAAAATGAGAAGGAAGTGGGTAGAATGAGTTTAATTGAAGATGCTAAATCAGGAATTGTTTTAGATGGTGCAATGTCTGATGAATTGGAAAAACAAGGAGTTGAAACTGACAATAAGCTATGGACGGCAACTGCATTAGTTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 7733-9097 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJBR010000047.1 Lactobacillus amylovorus isolate MGYG-HGUT-00161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7733 28 96.4 33 ........................G... TTTACTGGAAAAAATCAAAAGTCTACACCTCGA 7794 28 100.0 33 ............................ TCACCCGAACAGCAGTGTCGCAGGATCGTTGAT 7855 28 100.0 33 ............................ CAAGAAGAACGTCATCGCCTTCTTTAACACCAG 7916 28 100.0 33 ............................ ATAGTCAAAGTCGCGTTGAAAAATACGTCGCTG 7977 28 100.0 33 ............................ TAACAATGTTGTAAGTGACCACTGGATATTTTT 8038 28 100.0 33 ............................ TACTCGCAAACCTACCTCACCAGCGCCCACACC 8099 28 100.0 33 ............................ AAGTAGTCCACGCCGTATTGGTGCTTCCATTTG 8160 28 100.0 33 ............................ TTATGGCTATGCTGTTACTCCTAGAGACATAAA 8221 28 100.0 33 ............................ CTTGATAAGAGTAAAACAGCTACACGATTGAGA 8282 28 100.0 33 ............................ TCAATTTTTCCATTCGAAAATCCTCAATGCACA 8343 28 100.0 33 ............................ TAATTCAGATACTATTAAAGATACTAATACTGA 8404 28 100.0 33 ............................ TGTATGAACCCGTCGGCGAACTCGAGCAAGGCT 8465 28 100.0 33 ............................ CTGGCACTGGTATTGAAGACCCTAACTCACTTC 8526 28 100.0 29 ............................ TCTTTTGTATGCCTTGTGAGAGGCGAACT 8583 28 100.0 33 ............................ CTTTACAGTCATTCCGCCGGCTCAAGTCGTACC 8644 28 100.0 33 ............................ TTCTAGCTTTATAGTAGGCAGAGTTCAATTCTT 8705 28 100.0 33 ............................ TTCCACCGCCGGTTATTGACCTAAGGAGTAACG 8766 28 100.0 33 ............................ TAAATGCTCTTTTTTACGTCTTCGCTAGTTTGT 8827 28 100.0 33 ............................ TACCAATTAAAGTGCCTAGACTTAACAAAATGT 8888 28 100.0 33 ............................ CGCATTGCAACGCTTGTGGAGTGATACGGCAAC 8949 28 100.0 33 ............................ CTTAATATCGTTCATTCTCTTATTCTCCTTAAA 9010 28 96.4 33 ..........................T. CTATTCAATTATCAAGCATAACTAGTTGCTAAA 9071 27 71.4 0 ..........TAA.T...A....-..TA | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.4 33 GTGTTCTCCACGTAAGTGGAGGTGATCC # Left flank : GATCAAAAGAAGTTTGATGAACTAGGCGAAAAGCTGTTTATGAAGGGTGTTTTGCAAAACTTTGAGCAAAAGCATGGTCCAATTAAAGGCAGAATGATGGTTACCGAAGGTAAAATTCCACCTGAAATGCTTGTTAAGTTGCAACCAGAACTGATGAAAAATCCAAAATTTATTGTAGTTGAAGGTAGCTTTGACTTTTCAAACTATATGATCGGAATGGTTATTGGCCTTAACCCTGTTCGTCCACTAGCTAATGGCTGGTTGATTCCACAATTGAACCATCCTGGTATTAAGCCCACTAAGAATTGGCAAGAATTCTTTATGGAAAAAGTTATGGAGAAAACTGATGATAATGGAAAGATCGATTTGCCACTTTATAGTTGGATTTCTGATAAGAGTGATTTAACTTTGAGCGATAAGGAAAAATAATTTGTGCTTAAAGTGAATAAAAATCTAGTTTTTGTTTTTAAAGAATGGCTTTGTTATAGGGATCTTTTAGT # Right flank : ATTTTAAAATTTAAAAATCTTAATAGAGGGAAAAATAATGAAAAAATTATCTAGGTATGCAAAAAATCTTTGGGGTAAGAAGGCCACTCAAGATGAAACTGAATTATGGTTACCTTTAATTGCACATATGATAGATACTAAGAATGTAATTAATTGGCTTTATAATCATTGGTTGAATCAAGGACAACGTAATCTATTTCTGCAAAACATGTCAGATATAGATGTACAAAAATTAGTTAGATTTTTAGGCTATATTCATGATATTGGTAAAGCAACACCAGCTTTTCAGACGAAGGAATCTTATAATCATGATCGTGATTTAGACTATGATTTGCTTGAGCATCTATTAAGAAATGGCTTTACTAATTTAGATCAATTGCATTTGGCGAATGCTCGTAGAACACCACATGCATTGGCTGGTGAAGCTATTCTTGAAAGAGAAGGACTAAATACTTCTGTAGGAGCAATTATTGGTGGTCATCATGGAAAACCTCAGAATG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTAAGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //