Array 1 95002-95289 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFPF01000010.1 Clostridium botulinum strain Walls 8G 20552_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 95002 28 100.0 38 ............................ TCTTGAGTAAAAAATAAAACCTCATGTCCTTCTAGGGC 95068 28 100.0 37 ............................ GATACCTGTTGTGTAAGTTTAGCTATCTCTGGATTGT 95133 28 92.9 37 ......A........T............ ATATATGCACTACGGTGTTTTACATTATTCGGACTAT 95198 28 89.3 36 .............AG............C AAGGTAGATATGGCCATATCTACTTGCGGAGCCTAT 95262 28 92.9 0 ......A......A.............. | ========== ====== ====== ====== ============================ ====================================== ================== 5 28 95.0 37 TGAACATTAACATGAGATGTATTTAAAT # Left flank : TGTTTCATAAAAAAATAGATTATGAAAATATTAAAGAAGAACAATTAGATGAAATTTTAGAGGGGATAAAAAAAGAGTTTTATGATCTAATAATATCAGTAAAAGAAGAAAATAAAAACATAATATTAGTTACTAATGAAGTAGGTTATAGCATTGTTCCAGCCTATAAATTAGGCAGGATATTTAGAGACTTTCAAGGTATTATAAATAAATTTATAGCCTCTTTAAGTGATGAGGTTTATTTAGTAACCTGCGGAATACCATTAAAAATAAAATAAAATTAATTTTAGTAACTAATTAATCTAATTATAAGTAAAAGAATTTTCAAACCGCATTTAATTTTAAAATATATTCTAGGCATTGAAATATAAGCCTTAAGATAAGCTTTATCTCTATCTTTATAAAAAATGGCAAACGGTTGGAAAAAATTCTTTAAAATCTTGTAAAATCAAGGCTTCTATGATATTCTTAGAATTAAGAAATGGCTATTTTACTATGGT # Right flank : TCAGCATGTAAGATAAGGTGATTCAAAATAAATTAAATCTATTTTGAATCACCTTATTTTGTGTAATAAATACTAGCTATTTTAGATGATATTTTAAAAAAGCATATAATTATTATTTTATATTGTCACAATAAACATTAATAGCTTCCTTTAAAAATTTAGAAAGACCAGTTTTATATTTATCTATATTAGTAGTAAATCTTTCATCATTAACATAAAGTTCTCCAAGACCCCTAAATATTTCAGGGGTACAATCATAAAAGTTTTTTGAAATATGCTCCCTAAATTGGTGGACAGATTCTTGAACTTCCTTATCATCTGGATTTTTGTCCATAAGATTTGCTAGTTTTTTAAAAATTTCATCCCAACCTTTCATTATATTACTCCAGTCTTCCTTTGTATATTTGGATGTTTTTTTATTACTTTCCTTATAGGCAGAGGTATTACCGTATTTTTCTTTTATCTCTTCTGAATATTTTCTTTGATGCTCCTCTATTTCA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 206185-206479 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFPF01000006.1 Clostridium botulinum strain Walls 8G 20552_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 206185 30 93.3 35 ...A.............T............ TGGGAAAATATACTTGCAACTAATCAAGAAATACC 206250 30 100.0 36 .............................. CAAATAAGGAAAAAGAATATCTTATACACCCCCGGG 206316 30 100.0 37 .............................. CCAAATTCTCTGCCAGATCCTTCAAATTCACTAAGTC 206383 30 90.0 36 ............T..A....A......... TTGCACGTCCCATAAGGGGACTGATATCAAACTGTT 206449 29 76.7 0 ........A......A.T..A.-.AA.... | TG [206455] ========== ====== ====== ====== ============================== ===================================== ================== 5 30 92.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAGCGGATTTGCATTTAAAGAGGTAAAAGGTGGAGAAGAAAAAAGATTTGATATAGTAATAACCTATAATAAAAAAATGTATATTTTAGAACTTAAAATATGGAGAGGTGAAGAGTATCATAAAAAAGGCTTAATACAGCTAGCAGAATATTTAGAGCAATATAAATTAGATAAAGGGTACCTTTTAATATTTGATCTAAGAAAATCCACAAATTTAATAGTAGAAGTAGAAGAAAACTATATAGGTATAGAAAATAATAGTAAAAAAATAATACAGGTTTATTGTTAAAAAGTATATAGCAGTTAAAAATTATTTCTAAATATTTTTCCAAGTGAATTAAAAGTCTAAACCTATTCTAGCCATTGAAATATAAGGCCTAGGATAGGTTTTTATTATGAAATTTTAAAAAACAAAATCACTTGGAAAAATTTCTATAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTAATATGATATATAATAAGAATCATTAAAAGTCTTAGAAGAATCTAAGGCTTTTATTTTATGCAAAGCTTTAGAATGAAATATGATAGGTAATTAACTTATCATTAATAAAGATAATAATATTTTTAAAATAAAAGTAGAATAATTAGTTATATTAACTAAAGGGCATATGGTATAATATAGATAAATTTGTATAAAGAGGTGTATAAATGGAATTTTGGGAACTGATTGTAACAGCGATGTTGAAAAAAGACATATATTTTGAAGATTGTGGGTATATAATAGGGAAAAATATAAATAAAAGTATGCTTTGGGATAAGGACTTAAAGGAAGTACATCCAAAGAAACAGTATAAAAATTATGTGTTTAATAGTTTTTATCCTATAGAAAGAGATAAATTTTATAAAAAAGATAGGTTGTATATTTTTAATATTAGGGGATTAAGTAAAGAATTTATAGATAAAATAGAAACTTGCTTATGTAATTTAGAAAGTAATGAT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 219736-220028 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFPF01000006.1 Clostridium botulinum strain Walls 8G 20552_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 219736 30 100.0 36 .............................. CAAACTGCTTCTAAAGTATCTCCAATTTCTTCACCT 219802 30 96.7 35 ......T....................... ATTATGATGGTGATATAGTTTATGATAGCGATAAG 219867 30 100.0 36 .............................. TTGTATATTCTTTTCCATCTATTGTAACTGGTGTTC 219933 30 96.7 36 .......C...................... TTATATAAATCATCAAAAGCGTTATTTTTTTCTAAA 219999 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 97.3 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : TGAAATCTTGTAAAATCAATGGGTATATGATATTTTTAGAAATAAGGAATGGCTATTTTACTATGATTGAACAATAACATAAGATGTATTTAAATAAAAGATAAGGAGGGTAAATCAAGAAGGATATTTTTATTGAACAATAACATAAGATGTATTTAAAATTCATTTGACGACCATATGTAGAAATAAGGAAGGATGTTGAACAATAACATATGAGGTATTTAAGCAGTAAACCCAAATCTTTGATTTCGCGTGAGTCGCTTACTCCTTCGAGAATAGGAGAAGGAGTTTCGTTAATGAGCATAGTATATATCTAATTAAATTTTTCCAAGTGAATTTAAAATTAAAATCTATTATAGCTATTGATATGTAAGGCTTAGAATAGGTTTTTATTGTGAGTTTTTAAAAAAGCAAAATCAGTTGGAAAATTTTCTATAAAACTTTGTAAAATCAACACTTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : CAGGGAAGCAAAATCTCTAATTTATCGTGAGTCGTTTACTCCTTCGAAAAATAAGAGAAGTAGTTTCATTAATGAGCAGAGATATATTTTATATTTAACTAATTTTTTTCACGTGAATTCAATTTTAAAATCTATTCTAGCTATTGAAATGTAAGTCTTAGAATAGGTTTTTATTATGTATTTATGAAAAAACAAAATCACTTGGAAAAATCTCTATAGAATATTGTAAAATTAATGGTTATATGATATTCTTAAAAATAAGAAATGGTCATTTTACTATGGTTGAGCAGTAACATGAGATGTATTTAAATGTATCTAATATCTTGCAATGTCTATTGGCTCCTCTCTTGAACATTAACATGGGATGTATTTAAATATTCTTGCCTTTTCTATTTGTAGCTCTATACTATTTGTTGAACATTAACATGAGATGTATTTAAGCAGGGAACCCAAATTTACAATTTGGTGTGAGTCACTTACTCTTTAGAGGTAACGAAAAG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 221008-220722 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFPF01000006.1 Clostridium botulinum strain Walls 8G 20552_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 221007 26 100.0 39 .......................... ATAGATGAAATAGAAATAGTTATAGATTTAATTGAATTT 220942 26 100.0 40 .......................... GTTAAAGAAGATGAAAAAAGTAAATAGGTGATATTAATTT 220876 26 100.0 39 .......................... GGACATGAAGATATACTAGCCACACCGTTAGACTAATTT 220811 26 100.0 38 .......................... ATAATAAATATGCATGTGAATATGTACTTAGCTTATTT 220747 26 96.2 0 ..........C............... | ========== ====== ====== ====== ========================== ======================================== ================== 5 26 99.2 39 AAATACATCTTATGTTATTGTTCAAC # Left flank : CATATGAAATAACTGTTAACTATAAAGCGAATGAAAATTTAGGTGAAGAAAATTATAATAAATTTTGGAGTGACAAAAAAGCTGACAAGCTTTTAGAAAAGAATGCGGTAGTATTATTATCTCTTATACCAAACGCTGAAATTATTAAATTTAATGTAGACAATATAGGAGAAGAATCCTATAAATATGATAGAAAAAATTTAGAACAAAAATATGGAAACTTAAAAGACTTATCTAAAGATAATGATTCATTGAAAAAATTTTTAAATAACTAGTATCTAACAATTTATATAGACTCCATTAAAAGAAAATATTTAACTTCTTTTAATGGGGTTTAAAATTCCAATACCACTCTAAAGCATAGCCAAAATTAAAACTAAATTTTAAAAATATTTTAGTCAATAAAAATCTACTCAGATTCACTTGTTTTATGAAACTGATTCTCCATATCTCAATGAGTAAGAGATTCATCCTAAATCACAGATTGGGGTTCTATGCTC # Right flank : CATAGTAAAATAGCCATTCCTTATTTTTAAGAATATCATATAAGCATTGATTTTACAAGGTTTTGTAGAAAGTTTCCCAAGTGATTTTGCTTTTTTGTAAATACAAAATAAAATCCTATCCAAAGCCTTATATATCAATGGCTAGAATAGGCTCTGAATTTGTTACACCTGGGAAAATTAAATTTATGAAACTCCTTTTCGTTACCTCTAAAGAGTAAGTGACTCACACCAAATTGTAAATTTGGGTTCCCTGCTTAAATACATCTCATGTTAATGTTCAACAAATAGTATAGAGCTACAAATAGAAAAGGCAAGAATATTTAAATACATCCCATGTTAATGTTCAAGAGAGGAGCCAATAGACATTGCAAGATATTAGATACATTTAAATACATCTCATGTTACTGCTCAACCATAGTAAAATGACCATTTCTTATTTTTAAGAATATCATATAACCATTAATTTTACAATATTCTATAGAGATTTTTCCAAGTGATTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATACATCTTATGTTATTGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 227591-227818 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFPF01000006.1 Clostridium botulinum strain Walls 8G 20552_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 227591 30 100.0 35 .............................. AATTCGGATTCAGCTTCTATGTTTCCCATAGCCGC 227656 30 100.0 37 .............................. TCTAATGTAAAATATTCTATTGTCCTATCTTTATCTA 227723 30 100.0 36 .............................. CTTAATTCGTGAAGTACTTCTAACATCTGATTATGT 227789 30 90.0 0 ........T...................GC | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 97.5 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : CAAAAGCCTATATCCATGTATTTACTTTGTTTTTTGTAGTAAACATTTATGATATGATTGTTCTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTAGAGGAATGGTTCATTTTATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTACGATTTGGTGTGAGTCGCTTACTACTTTGAGAATTGGAGAAGTAGTTTCATAAATTAAATTTTCCAACCACAATAAATTTAGAAACCTATTCTAGCCATTGGTATATAAGGCTTAGAATAAGTTTTTGTCATATGTTTTTGAAAAAATAAAATCACTTGGAAAATTTTCTATAAAACCTTGTAAAATCGATACTTATATGTTATTCTTAAAACTAAGGAATGGCTATTTTACTATG # Right flank : CAGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTGCTTCTTGGAGGAGAGGAGTAGGAGTTTCATTAATTGAATTTTTCCAGGTGCAATAAATTTGCGAGCCTATTCTAGACGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGAAAACTTTTTCTAGAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGATATTGAACATTAACATAGGATGTATTTAAATGTCCTTTCTTTTGTTTTATCTATAAATAAAGTAAGAGTTGAACTTTAACATGAGATGTATTTAAATTTTATTGCTTTACTAATTGTCCGTAGATCTTTTTTAGTTGAACCTTAACATGAGATGTATTTAAATTTGTATTCATTTATTGTATTCTTAAATACATTCTCGTTGAACATTAACATAGGATGTATTTAAATCCATAAATATCTAATAC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //