Array 1 575106-573981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYU010000001.1 Streptomyces chumphonensis strain KK1-2 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 575105 29 100.0 32 ............................. ACGTCGGGCTGGCGTGCCCGGCTGAACTGCAC 575044 29 100.0 32 ............................. GTCGAGTCGGGCGGGGAGTGGACCACCGACGG 574983 29 100.0 32 ............................. GGCGTCTGGCTGGAGGACTTCACCCACGAGTT 574922 29 100.0 32 ............................. CTCCAGGCCCTCTACGGCAATGGCGGAAGTGG 574861 29 100.0 32 ............................. GGGGCGGTGACAGTAATCCGCCGCTCGCCATT 574800 29 100.0 32 ............................. TCCATGCCTGGCGTTCGCCGGGCCGATTCGAG 574739 29 100.0 32 ............................. TCCTCGATCGCTTTCTTGATCATGCTCAAGGA 574678 29 100.0 32 ............................. CAGTCGTGTCTTCCGTCTTGGCTTCGTGCACG 574617 29 100.0 32 ............................. ACCGGCCGCGCGGTGCGGGTCAGGGTGGTGAT 574556 29 100.0 32 ............................. GGACTTTCCGACACAGAGCACACGGTGACCAT 574495 29 100.0 32 ............................. CTCATGATCCTGCACCGCCAGCGCTCCGCTGC 574434 29 100.0 32 ............................. TGGGTCCCGGAGGGGACAAGGAGCACGCCGCG 574373 29 100.0 32 ............................. AGGGCCATCGCGCCGACGGTGTCCTCCAGGGA 574312 29 93.1 32 ...G.................G....... CAGGTCGGGTTCATCGGGCGGGCGGAGACCGA 574251 29 89.7 32 ...........A.GT.............. CAGGTGGCCGGCGGCGGGTTCTCAGAGGCGCA 574190 29 89.7 92 ...........ATG............... TGAGCGTGCACCACGGCGACAGGCTCGTGGTGTTGCTCCCGGCGCAAACGGGATGGCCCTCCGGCACCCGCTGTGAAGCGACCCGATGTTCC 574069 27 86.2 32 .G.........--............C... TCCGCCCGGTGGTCGGGGGCTCGCCTCGGTCG 574010 29 86.2 0 ..............T........CC...T | C [573984] ========== ====== ====== ====== ============================= ============================================================================================ ================== 18 29 96.9 36 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGCCGGACGGAACTACGGAGGCGGGGACGACGATGTCCCGGAGGCGATGACCTGGTGACCGTGATCGTCCTGACCAACTGCCCCGTCGGCCTGCGCGGATTCCTCACGCGCTGGCTCCTCGAGATCTCCGCCGGAGTCTTCATCGGCAACCCCTCCGCCCGCGTCCGGGACGTGCTGTGGAACGAGGTCCAGCAGTACGCCGGACAAGGCCGCGCGCTGCTCGCCCACACCACGGACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCCGTCGACCACGAGGGCGTCACCCTCATCCACCGCCCGAAAACCAAACCCCTCGACCCCGCACCGACCACCACCCCACGGCGCGGCTGGAGCAACGCCTCCAAACGCCGCCGCTTCGGCAACCGATGACAACAATGCACGCTATGGGTGAAATGCCGGACTCAACGAAAGTCATAAAAAACCGCGCTCCGCCCGGGTAAACCCCCAGGTCACGCAGC # Right flank : TGCTTCGGTGCGGGTGTCGGTGGTGCTTGCCTGCCCGGCCGCCGCCCTCGCCTCGGTGGGCGTCCGCCGGGTGGGGGGAATTCGGCGGCGGCGCCCGCGGGGTCGTGGACCGGGCGTCGGGGGGCCGTCAGGGTGCGTGGGGTGACCTCCACCGCGATCGCCGACTACGGGATGCTCGCCGACGGCAGCTCCGCCGCTCTCGTCGACCGGCGGGGCTCCGTGGACTGGCTGTGCCTGCCGCGTTTCGACAGCCCCGCCCTGTTCGCCCGGCTGCTGGGCGAGGACGCGGGGCACTGGTCGGTGACGCCGACGGGCGGCTTCGACGTGCGGCGGCGGTACGTGCCGGGGACGCTGGTCCTGGAGACGACGTTCACGACGGCCGGGGGCACCGCGTGTCTGCGGGACGCGCTGGCGGTGCCGGAGGGGCAGCGGGGGCACGACCTCGGGATGCGTCCGCCGCACGAGCTGCTGCGCGAGGTCGAGGGGCTGGACGGGGAGGT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 584785-585790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYU010000001.1 Streptomyces chumphonensis strain KK1-2 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 584785 29 100.0 32 ............................. CAGTCGGCGACCTGCTCACCCAGGGGGCAGTC 584846 29 100.0 32 ............................. GGCGCCGCCCCGGCAAGGGGTTCGAGCAAGGA 584907 29 100.0 32 ............................. GCGCTGCCGGTGACGCCGAGGTCGCCGGTGGG 584968 29 100.0 32 ............................. TCGTGGACGTACGCCATCACCCCGCTCGGCGG 585029 29 100.0 32 ............................. GGGTCGGCGACGCACTACCGTTCTCCTTCATC 585090 29 100.0 32 ............................. GTGCTTCCCGGCCTACTCGCCGACCTCCAGCA 585151 29 100.0 32 ............................. CGACCCGCAGACTAAGTGTCAGCCCTGGCCGC 585212 29 100.0 32 ............................. TCGTACTCCACTCCGCGACGCTGCTCGGCGGC 585273 29 96.6 33 ............................G AGCGTCGAGGGCTCGGCGGTGATGTCGCTGGCC 585335 29 100.0 32 ............................. ATTGCCCCTCGCAGCATGGGCAAAACCACCGA 585396 29 100.0 32 ............................. GCATCGAAGTCGGCGACGTCGGCCGGCTCGTC 585457 29 100.0 32 ............................. AGCTCCACCTCCGCCGAGGTCGCCGGTGCGGG 585518 29 100.0 32 ............................. TGGTGGGTGATCGAGACCACCGAGGACGGCTC 585579 29 100.0 32 ............................. CGGCATGCCCACCGACCCGGCCGTGGTGCAGG 585640 29 100.0 32 ............................. AGAAGAAGAAGGCCGTGGAGTACACCCTGGAG 585701 29 96.6 32 ............................T GGGACGACGTCATCCTCCGGGCCCTGATCGCC 585762 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.6 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TCGTGCACGCCCGCCAGCCACACGGCCAGCCGCCGCGCGTCCGCCTCCCCCTCCGGAAGGGCGTCCGCGACCAGCCGCCGCACACTCAGCGGCAGCCACTCGTCCCACACCAGCCCGGCGACGGCGGCGCTGTCCTCCATGTGACGCCACAGCGGCAACCAGCCGCCGAAATCCCGATCGTGCTTGGCCCACACCGACAGGACGGGCCCGTTCAACCTGCTCCGGAGGCCCTCCCGGGCCCTCCCCCCAACGTGCATGGGCATAGGAATACACGCAACGCACAGCGTGCGTCAGCCGATTGAAGGAATCGCGACGCCGCCGCTTTCGACCTCACCGGAGTGGCCACCGGGAGCCCGACCCAACCGTTACGATGACCGCTTTGAGCTGCCGCAGCCCTGGACACCGACCTGCGAAGTGAGCACCCTATGCACGATTTGCCGGAATCCGCGAAAGTCATGGAAAACTCGCACCGCACGCCATAAACCCGCAGGTCACGCAGT # Right flank : CGGATGGTGTCCGCCTGCGGCGACAGGTCGACGACGAACTGGAGGGGGTTCACCAGCACGTCTCGCCGGCGAAACACGTCGCCGCCTCCGCAGGACCTCGCGTTCCTCCTACAGCTCGCGGACCCTTTGCGCAGACCTGCGTTCCCGGCTTCCAGCGGTGTGAGCGGCCCGGCCAGCGCCTCCGTCCGGCGGCCCCGGGGTCGGCTCGCGTCAGCCGCCCGACCCAGTTCCGAGGCGTCTCCGGGTTGATCCCCAGATCGGCGGCGACCGACCTGATCGTCACCTCGGGCCCGCGACTCCTACAGCGCGGCCGCGTCCGCCTTGAACTGCGGCAGGTAGCTCTTCATGACCACGAGACGCCCGTTGTCAGATCCTCAGAATCCAGCGTCTCGCGTGTCCAACATCAGGGGTCGAGGCCCGTGAGCCGCACAGGTTGGAGGGAAGCGCACGTTGAAGTGGAACCCGCGCTCCCGGCGTGCCACGTCATATATGCCCGGTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 599529-600106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYU010000001.1 Streptomyces chumphonensis strain KK1-2 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 599529 29 100.0 32 ............................. GCCTCGGAGCGGATGGTCGCGGCGCAGGCCCG 599590 29 100.0 32 ............................. GGCAGCTTCCAGTACCGGGTGGTGAACCTCTT 599651 29 100.0 32 ............................. GACGACTGGGCCCGCTTCGCCAACGAGACCCG 599712 29 100.0 32 ............................. GGGTGACAGCAGTTCGCGCCCCAGCATTCGGC 599773 29 100.0 32 ............................. CACCTGAACCTTGCCGGGCCGCTCGCTTTTCG 599834 29 96.6 32 ............................G CGCCCGCAGCCCGTCCGGCGACGTGTCGGCGT 599895 29 96.6 32 ............................T GGCTACCAGCTTGCCGCCGTCGTCCGGATTCG 599956 29 96.6 32 ............................G TGGTTCTCGTGGCGTAGCTGCCGCAGCCGGGC 600017 29 96.6 32 ............................G TGGTTCTCGTGGCGTAGCTGCCGCAGCCGGGC 600078 29 89.7 0 .....................G.....GG | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CCCGAGCACGATCCCTAAGCATTCAGCGTAGGCGCCCCGCCACAGACTCGACCGGCCGATCCGCGAAATCACGCTCCCGTTGATGGGCCCCTTTACGTAGACACCGATCAGGTTGACGGAGCCCTCATGCGCTGGAGCGACGAGGTCCACAGGCATCGGCCGTCGCCTCAGGAGCCACCAGGCCATCAAGTTCGTACAGATGTCCACTTGCCAGCAGCAGTCGTGCACAATCCCCGGCCTGGAACAGCCTGGGAACGATGGCTCTCGAACGTCCTGACCGACGCAGACTGGACGCCCCGTTTGAGCGGGCTGACGGCAGCGGCGACAGACTTCATCGGAGCGCCCGCAGGGACGTTGCCGCAAACGCTACGATGGCCCTTTTGAGCTGCCACCGCACCCCACGCCGACCACAAAGCGAGCACCTTATGAGCGATTTGCCGGATTCGGTGAAAGTCATGGAAAACTCGCGTCGCACGCTATAAACCCGCAGGTCACGCAGT # Right flank : GGGTTGGTCCCGCCACGGGCAGCGTGGCGTACTCGTACGCCACGCTGCCTCCTCCTGTGGTGGGCGCGGGCTGCCGAGGGCGTGGTCGGCGGCCCCGACGGGAAGAGAGACTGTGTTCGGTGTAGGCGGGCGTTCAGCCCGGACCGGGGGAGGGCCGTGCTCCGCATCCACTTCACCGATGTCGACCTCGGCCGCTTGCGCATCGCCACCGGGCCCGACGCCATGTGGGAAACCGTGCTCAGCCTGCACCATCTCGTCTCGCCCAGCACCTTCTTCGGTCCCTGGCAGCGGGTCACGCGGCGTGCGCTGGCCGAGGCGAGGCTCGGTCAGGACGTTCATCTGCTGACGGCCCTCTCCCCGATCAGCGCTTACTTTCCGGACTTTCTGACGCCAGCCGGGCCGGTCAGTGACTTCGGGGCCGGGGTTGAGGAGGTGTTGTCCACCTCTCGGAGCCAACTCCGAGAGGAGATCACCCTCCTGGCTGACGGACGCACCGATCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 603323-603839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYU010000001.1 Streptomyces chumphonensis strain KK1-2 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 603323 29 100.0 32 ............................. ACCCGACAACTGGACGGGCTGGCGGGCGTGTT 603384 29 96.6 32 ......................C...... GAGGGGTCGACTCCGTCGGGGACGACCTGCGG 603445 29 100.0 33 ............................. GTGAGCACTCGGCGTACCGGGGAGAGAGGGTGT 603507 29 100.0 32 ............................. CTGCCGTTTCGCATTCTCGACCCTGGCGACGC 603568 29 100.0 32 ............................. TCGCGGCTCGTTGTCGTCGCACGCGAGTCCCT 603629 29 96.6 32 ............................T CGGGGGACCAGCTCACCGACCACGAGACGCGG 603690 29 100.0 32 ............................. GCCCAGTCGGAGTCGATGTAGTCCTGCGCCGG 603751 29 100.0 31 ............................. GCCGAGTCGTCGTGTGGGGCACGCCCGGACC 603811 29 96.6 0 .....................G....... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.9 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AACTGACCTGACCCGGTGAGGGGGGCGAGCATGTGGCATCGGCGTTGCACGCCGGTGCCACACCGCTCCCCTGCGGCACGTTCCGGTGCCACGACGGCAGGCGCAGGAGGCCGGCGCGGCGACCGGCGTGAACCGCCGTCGCGACGACTGGCAGCGTGCAGAGTCGCGGCCAACCGGTGACGCGTTCGTTCCACCATCGACCGGCACGGAGCCGGGCAGGCCACGTCGAGGTCCACAACGTCCGCCGCGCAACATGCTCTTCGACACATAGGCACACGGAAACGGTGGCGGACGCACCCGGTTCGGGGGCCAACTGCGGTGACCACCGACTTCGTCGGAGCGCCCGCAGGAACGTCACCCCGAACGCTACGATGACCCCTTTGAGCTGCCACCGCACCCCGCACCGACCACAAAGCGAGTACCTTATGAGCGATTTGCCGGACTCAGCGAAAGTCATGGAAAACTCGCGTCGCACACCATAAACCCGCAGGTCACGCAGT # Right flank : CCGCAGTACCCGACGATGTCGCCGGTGGGTGGTGCTGTCTGCGGCTCTCACGGCCGGTGTCTCAGCGGGTTGGTGCCGCTGTCAGCCGGTGGCGGGAGGGTAGACGCTGTCGACCGTGTCCTGGTCGGTGGTGGTCTGCCACTCCATGACCTTGCTGCCGTCGGTGCGTTCCAGCACGTAGCGGTCGGCACGGAACCAGATGCTCTGGGCCAAGCGCTTGCCGTTGGCCGGGTAGGAACGCTCCACCGTGACCGTGGTGCTGCTGGATTTGGTGGTCTCGGTAGCGACCCTGGTCCGCAGTTGATAGCTGACGGTGGTACTGAGGGAGGCGGAGAAGCCCTTGTACTCCATCGAGGTTTCGGCGGTGACGGAAATTCCGGTGGTGGACTCCACCTCACGGGCGTTGGTGGTGGACATGCCCACGGTCGTGCTCTGGGTCTCCGTCTTGGCGATCTGGCCGCTGTGGTCGTAGGAGTAGACGACCTTGTAGAAGCCGTACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //