Array 1 1590-1854 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUK01000001.1 Methanocaldococcus villosus KIN24-T80 MetviDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1590 36 100.0 38 .................................... TAAAGAGTAGGTGATATTATGGCGGCACAAGGGGGAAA 1664 36 97.2 47 ..........................C......... GTTCAGAATATACAAGTATTGATAGCGTGGATTTAACCGATTATTAG 1747 36 100.0 36 .................................... TGGATAAGTATAATATTAGTTTATGGGAATATAGAG 1819 36 94.4 0 .......................A..C......... | ========== ====== ====== ====== ==================================== =============================================== ================== 4 36 97.9 41 TTTCCATCCTTGTTTTAATGGATGAGTGATTCAAAC # Left flank : GGGTGTTTTATGGTATAGAGAGTGGAAGTGATAAGATATTAAAAGATATGAAAAAAGGAACCAATAGAGAAAAAAATTTATATGCTATACAGTTGGCTAAAGAAATGGGTGTAAAAGTTGCTGGTAGTTTTATTGTAGCTTATCCAACAGAGAGTGAAAAAGATTATTTGCTTACTAAAGACTTTATTGCTGAAGCTGAGTTAGATGATATTTTTGTTTCTATAGCTGAACCTATTCCAAAAACTGAGATGTGTGATTTAATATTAGATATGAATAAAGAAGATTTACTATTATATAAAACATATAACCATAATTTGAGTGTAGCAGAGTTCAGATGCTATGATCTTTTAGTATATGGGGAAATGTTTAAACCTAACCCAAGACTTTCTCCTTATTTATATAAAATATATCTAAATGAAGCTAAACAACAAGGAGAAGACATTAGAAAAATTATAGATATTATTTTCAAATATAAGGATATAATAAAATAATTACATAGG # Right flank : CCCTATGCAACCACTAATTATATTCGCCAAAACTCCTATATAAACCTTTCTTTTTCAACAAGATTTTTCTTACTGCCCAATTATTAAAACCTTTATAAAGTTAAGAAAGATTATGCAAATTATTTATAAATATAACGCACAACTGTATTATAAAATATAAACAATTAGAACTTACCTAACTAAAATAAAAACAAACTAAACATAAAACTATAAAAATAAATATCTAAAATAATTAAAAAAATCTCAATTTTACTTAGAAAAAATCATTATTACTTTTTCCCAATTTTCTCATACAAATTTTAGCAAGAGGGTATATAAAGGCAAGAAAAGTTAATATAAGTTATTAAAAATCTTTATATTTATAAATTTTATCCTGTTTTATTAATGCTTCAATAACTGACCTCTTTACAGCTTTAGCTATCATTTCCCCCATTTTTGTATGCCCTCCAGTGTAATCTACTTTTCTTCCAAAACCTTTAACAACAATAACATTATCCGTT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCATCCTTGTTTTAATGGATGAGTGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 293803-293539 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUK01000001.1 Methanocaldococcus villosus KIN24-T80 MetviDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 293802 37 97.3 39 ........................G............ GACTTGGGACTATCGAAATATTCGAATGCACTAATAACT 293726 37 100.0 38 ..................................... GGGGAGATATTCCCCTACTCTGGAGATGTGCTAAGAGT A [293716] 293650 37 100.0 38 ..................................... CCAACAATGTTGGCTGAATTACTGCATATGGCTAAAAA 293575 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 99.3 39 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : ATGAGAGGCACTTAATAACTAAAACTGAAGAATTATTAAATGAGTTTGAGATTATTGATGAAAAGATGTTTCTAAATTTGAATAACAAATATTTTAAAAAATTAAGTGATTATAAAGATAAATCAAAAGATATTTTAAAAGTTATAGAGAAGTTTGAATATGAAAAAGTTGAGAAAGAATTTAAATTAATTGAAAATATTCCATCTATAGATTTATTTGTTTGTATTGAAGATGAAGCTGAGAAGATTTGGGAAGAATTTGAAAGAATTAATAAAATAAAAGATGCATTTGAAAGAAGGAGAGAGTTTTTAAAAATAAAAAGGGAGTTTTATAGTTATGTTATAAGTGTTCCTGAATATCGTATAAAAGGGAAGGATATCTTATTTGAGAATTTGAGTAAAATAAATGAGAAATACTATGATAAAGAAACTGGTTTTAAGATTATTGAAGATAAAACAATAATATTATAACTATTTTTCATCTTTTTTTCATCTTTATTT # Right flank : CCTATGCAACCACTAATTATATTCGCCAAAACTCCTATATAAATCTTTCTTTTTCAACAAGATTTTTCTTACTACCCAATTATTAAAACCTTTATAAAGTTAAGAAAGATTATGCAAATTATTTATAAATATAACGCACAACTGTATTATAAAATTCAAATAATTATAGCTTACCTAACTAAAATAAAAATAAACTAAACATAAAACTATAAAAATAAAAATAAATATCTAAAATAATTAAAAAATCTCAATTTTAATTCGAAAAAATCATTATTACTTTTTCCCGATTTTCTCATACAAATTTTAGCAATAGGGTATATAAAGGCAAGAAAAGTTAATTAGAAAAATTGATATAGTTATTAGAAAAGTTAATTAATATTAGTGTCCCCCGGGGGAGCAAAGAGGGTATCATCGCACGCCAAGGCTCACCCCCGCGGTTTCCCGGGGGTATATTATAAGTTTTAATATCACTTTATATAAGCTTTCCATGATAAGTCAAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 3 309423-309006 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUK01000001.1 Methanocaldococcus villosus KIN24-T80 MetviDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 309422 37 97.3 39 ........................G............ AATATCTATACAGCTAATAACTGTGATAAAACAGATATA 309346 37 100.0 37 ..................................... CGCTTAGCACAAGAAGGAATCTTGGAAAGAACATATA 309272 37 100.0 37 ..................................... AAAAAGCGGTTATTATATTGTATATTGACATAAACAT 309198 37 100.0 37 ..................................... AAAAAGCGGTTATTATATTGTATATTGACATAAACAT 309124 37 100.0 45 ..................................... GTTTGGCAGTAAAAGGTTGTATACGATTAATTTTAATGATGTAGG 309042 37 97.3 0 ........................G............ | ========== ====== ====== ====== ===================================== ============================================= ================== 6 37 99.1 39 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : TAACCTTAACTCCAGGAGCTTTTGGAGCAACCATTGTAACATTAACATTATCTGGTGGAATTATTAAACCATAATGTATATTATATCCATGAGAGAAACTTAAGGTCTTTCCTTCTGTTAAGTGTTTTTCAATGTATTTTTTATAAACTATAGGTTGAACTTCATCAGGAATAAGCATATGTATAATATCAGCTTCTTTAGCAGCTTCTTCTATAGTTTTTACATTCATATTATCTTCTATAGCTTTTTTCCAAGATCTTCCATCGGGTCTTAAGCCTAAAATAACATTTAATCCTGAATCTCTCATATTCAAAGCCTGAGCTCTCCCCTGACTACCATAACCTATTACAGCAATAACTTTGTCCTTAACAGCATCTAAACTAACCTCATTATCATAGTAGATTTTCACTCTATCACCTAAAATTAGATTTAATGTTTTGTTAATATATTAATGTTTTTATAATTTATCTTTTATGCTTAATACATTCTTCTATTTTGTA # Right flank : CCTATGCAATCACTAACTATATTCGCCAAAACTCCTATATAAATCTTTCTTTTTCAACAAGATTTTTCTTACTACCCAATTATTAAAACCTTTATAAAGTTAAGAAAGATTATGCAAATTATTTATAAATATAACGCACAACTGTATTATAAAATATAAACAATTAGAACTTACCTAACTAAAATAAAAACAAACTAAACATAAAACTATAAAAATAAATATCTAAAATAATTAAAAAAATCTCAATTTTACTTAGAAAAAATCATTATTACTTTTTCCCGATTTTCTCATACAATTTTTAACAAGAGGGTATATAAAGGCAAGAAAAGTTAATTAGAAAAATTGATAAGAGTTATTAAAAATCTTTATATATAGTTTATATATTTAAAAGTAGATAAACTCTTATCTGTGATAATTATGTTAGATATTGCTTTAAAAGTAGTTAATGAAATAGATAAGAAAATAAAGCCATTAATTGGATGGGAAAAGGCAGAAGAAAT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : GTTTCCATCCTTGTTTTAATGGATGAGCGATTCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 4 336605-337161 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUK01000001.1 Methanocaldococcus villosus KIN24-T80 MetviDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================================= ================== 336605 37 92.1 33 T.....-.................G............. TAGTCCTACCCATATTTTGACCGTTTGTGTACA AA,T [336608,336611] 336678 38 100.0 33 ...................................... GTTTTAGAGATGACACAATGAACAGGGATAGAG 336749 38 97.4 35 .....................................G ATAATATCAGTTAGTTATCCAGACTTCTTAAAGAT 336822 38 100.0 45 ...................................... TTATGTGGCTAGAATGAATAAAATAGCAATAGAAACAAATAATAT 336905 38 100.0 35 ...................................... AGCAAAGACGCAGCTGAGAAGTTAGAATCCAAAAT 336978 38 100.0 35 ...................................... GGATATGGATTATTTATATGAGTTTTATTACCATG 337051 38 97.4 35 ........................G............. TATAATAAAAAGATCATTATTGAAAATTGTTGAAA 337124 38 94.7 0 ........................G............C | ========== ====== ====== ====== ====================================== ============================================= ================== 8 38 97.7 36 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAACA # Left flank : TTTTTACTAAAACATAATCATGTGCTCCATGATATGCTCCATCAAATTTTATAATCTTTTTTCTTCCAGTGTAACCTCTTGCTAACCTAATAGCTGACATTGTAGCCTCAGTTCCTGAATTAACAAATCTTACCTTTTCAGCTGATGGAACATAAGAAACTACAAGTTTAGCTAACTCTATTTCTTTTTCTGTAGGGCATCCAAATGTAGAACCTTTTCTTATTTGCTCTATTACCTCTTTAATAACTATTTCATTACAATGACCTAATACTAGAGGACCATAAGCTAAACAATAATCAATATATTTATTACCATCAACATCATAAATATAACATCCTTCACCTCTATCAACAAAAAAAGGATATGGTTCAAAATATCTAACAGGGCTATTAACTCCACCAACTAAGTATTTTTTTGCTTCTTCAAATAACTCTTTAGATTTCATGAACCCACCTATATTCTCAATGTGTTTTTATTATTATTTAAAATTTTATATTTAT # Right flank : CCTATGCAACCACTAATTATATTCGCCAAAACTCCTATATAAACCTTTCTTTTTCAACTAGAATTTTCTTACTGCCCAATTATTAAAACCTTTATAAAGTTAAGAAAGATTATGCAAATTATTTATAAATATAACGCACAACTGTATCATAAAATATAAACAATTATAACTTATCTAACTAAAATAAAAACAAACTAAACATAAAACCATAAAAATAAAAATAAATAACAAAAATAATTAAAAAATCTCAATTTTAATTAGAAAAAATCATTATTACTTTTCACTAATTTTCTCATACAAATTTTAACAAGAGGATATATAAAGGCAAGAAAAGTTAATTAGAAAAATTGATATAGTTATTAAAAATCTTTATATATAGTTTATATATTTAAATGTAGATAAACTCTAAAAAATTTTTAAGGTCAAAATTATGGATGCATTAGTAATGGCTGGTGGTAAAGGAAAGAGATTAGGAGGTCTAGAAAAACCATTAATAAAAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 588932-589477 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUK01000001.1 Methanocaldococcus villosus KIN24-T80 MetviDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 588932 37 97.3 37 ........................G............ TAATACAGATTAAAGACGGATATTTTATAGTGAATGG 589006 37 97.3 34 ........................G............ GATAACTTAATTAGAAAAATGAAGGAATTATTTG 589077 37 100.0 34 ..................................... ATGATTTAAAGGACTGGGGATTATTCGGAGAATT 589148 37 100.0 35 ..................................... TTGTTAGACATATATAATAAATTAATGAGCAAAAT 589220 37 100.0 37 ..................................... ACCTTTCTTCCTAAATTGCTAAGGTTTAACTCATTGT 589294 37 100.0 36 ..................................... TGGAAAGTGTGGATACTATATAAATAGAGAAGGCTA 589367 37 100.0 37 ..................................... TTGGGATTTAAATGTCAAATCAAAAATGTTTTTAGAA 589441 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.3 36 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : TTTTTGGCATTTCATCTACACCCTTTATAAAATATAAAATAAACTTCAAAAAAAGGATATGAGTTTTTTAGAATATCTCTTTATATATTCATGAACCTAATTATTATATCATAACCCAATAGGAGGTGAAATCATGGTAGGTCCAAGAAAACCAAAAAATCCAAAAAATTAATGGTAATTACATAAGGTCATGAAATTCTTTCAGGGTTATTCCTTATTAAATTTCCTTCTATTTCTTTTTAATAATATTTATCCCTTTTTTAAATTTATGTTGTTTCCATAAACCATAAGGATTTTTTAAGCTAGATATACAACTTTGTTTCCATCCTTGTTATAATCGCCCCATTGATTGGTTTTGACATTAAAAACACCATCAATCTTTTTTCTTCTCGCCTGTTATTATACCACCAATCGCTCCAACTATTGCAGATAACACAAGTATCCAATCCTTCCAACCATCTGGATAATACACCAAAACAAATATTGTGATTATTACCGCA # Right flank : CCCTATGCAACTACTAATTATATTCGCCAAAACTCCTATATAAATCTTTCTTTTTCAACAAGATTTTTCTTACTACCTAATTATTAAAACCTTTATAAAATTAAGAAAGATTATGCAAATTATTTATAAATATAACGCACAACTGTATTATAAAATTCAAATAATTATAACTTATCTAATTAAAATAAAAACAAACTAAACATAAAACTATAAAAATAAAAATAAATATCTAAAATAATTAAAAAATCTCAATTTTAATTAGAAAAAATTATTATTACTTTTTCCCGATTTTCTCATACAATTTTTAACAAGAGGGTATATAAAGGCAAGAAAAGTTAATTAGAGAAGTTAATATAAGTTATTAGAAAAGTTAATTTATTTAAATCTCTTCTTAATTGGAGGGGTTAAAATAGGTTTCTCAGGAATTAAGCCAGAGGGTTTATAATAAAGTATTAGTAACATTAACATTCCAAATAGAATATAGGATATCCAAACAGGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : GTTTCCATCCTTGTTTTAATGGATGAGCGATTCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 638531-638926 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUK01000001.1 Methanocaldococcus villosus KIN24-T80 MetviDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 638531 37 100.0 34 ..................................... TCGAGATTTCAGAATTTGTTAGTGATGGAGCAGT 638602 37 100.0 36 ..................................... CTGATTTAGGAAACATTGGATTTATTTATGATTTTT 638675 37 100.0 36 ..................................... AGGGCTTAGGGTTTACAAGGAAATTTTGAGAATGAA 638748 37 100.0 35 ..................................... GGGTTCAACTTGGTGTTAGAGGATACAATCAGTGT 638820 37 100.0 33 ..................................... GAGACAGTATAAAGGAAATGATTACTGATATAA 638890 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 35 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : CTACTCTTTCATGAGCCTGTAATCTTGTCATTCCAGGTCCTGATATCCCTAATGTGACAGGTTTATCATATTGAACAGAAAGATCTGCTATCTTTCTTGCTGCATTATGGACAACTATCTCATCATGCTCTGTTTCACCCTCAATAACACATCCAATAGCAACTACAGCATCAACATCATCTTTTTCTAGAAGTTTTTTTATGGCTAATGGCATGTCAAAAACTCCTGGAACATAGAGTTTATATTTTATCTCAGCTCCTAAAAATTCTGCATGCTCTTCAGCTAGTTTTTCCATCATATATGTTATATCTCTATTGAACTCTGCAACAACCAAAGCTAATTTAACCATAATGTTATCACCTAATTTAATTTTTATAAAAAATTCTTTATTTTTTATTTAAAAACTTTTTTTATGAATAAAAACTTAAATATAATATAATTTCAATGAACTTCTATTCAAAAATAGAAGTCTTCTTTTTCATCCTTGTTAGTTTTCATCA # Right flank : CCCTACGCAACTACTAACTATATTCACTAAAACTCCTATATAAATCTTTCTTTTCCCATGCGATTTTTCTTACTACCTAATTATTAAAACCTTTATAAAGTTAAGAAAGATTATGCAAATTATTTATAAATATAACGCACAACTGTATTATAAAATATAAACAATTATAGCTTATCTAACTAAAATAAAAACAAACTAAACATAAAACTATAAAAATAAAAATAAATATCTAAAATAATTAAAAAATCTCAATTTTAATTAGAAAAAATCAGTAATACTTTTTCCCGATTTTCTCATACAAATTTTAGCAAGAGGGTATATAAAGGCAAGAAAAGTTAATTAGAGAAGTTAATATCTAATATTAAATTAATTAAGAAGTACTCTCCCTTTAATGAAACTTTTTATTATTTCTTTAATGTATATTCCTTAAAACATCTATGGCATGTTTGCACATCACATTTATTTTCCTAAATAAAATCTTTTCTTCATCCCAATCTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 7 654054-653799 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUK01000001.1 Methanocaldococcus villosus KIN24-T80 MetviDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 654053 35 97.1 38 ....A.............................. ACTCTCTCGCCTTCTTTTCCCATTCACTCATCAGTTGG 653980 35 100.0 38 ................................... ACACGTTTGTGTTCTTCACATGCTCCATGTTGTCACCT 653907 35 97.1 39 ............C...................... ACATATGAAACTTAGCCCACAGCTCTTTATCTTCATATA 653833 35 94.3 0 ..C.........C...................... | ========== ====== ====== ====== =================================== ======================================= ================== 4 35 97.1 39 GTTTGAATCGCTTATCCATTAAAACAAGGATGGAA # Left flank : TTATATTCTTTCATCTGTGTATATGGATGCCAAACATACTCCAAATCCCACTTTTCTAATAATTTTTTGTCCATAACATCACCAAAATTTTTTAGAGTTTATCTACATTTAAATATATAATCTATATATAAAGATTTTTAATAACTATACCAATTTTTCTAATTAACTTTTCTTGCCTTTATATACCCCCTGTTGAATTTTGGTACTAGAAAATCAGGAAAAAGTAATAATGATTTTTTCAAATTAAAATTGAGATTTTTTAATTATTTTGGTTATTTATTTTTATTTTTATAGTTTTATGTTTAGTTTCTTTTTATTTAAGTTAGATAAGTTATAATTGTTTATATTTTATAATACAGTTGTGCGTTATATTTATAAATAATTTGCATAATCTTTCTTAACTTTATAAAGGTTTTAATAATTGGGTAGTAAGAAAAATCTTGTTGAAAAAGAAAGATTTATATAGGAGTTTTGGCGAATATAGTTAGTGGTTGCATAGG # Right flank : GAGATAAAAACAACGAAAAGTATATATATAATAGTAACATAGTCTTGAATTACTAAGACATAAAATTTATATACCACATATAACTATAGAAATACCTTGGCTATAGAGCCGGGGTAGTCTAGGGGCTAGGCGGCGGACTGCAGATCCGCTTTACGTGGGTTCAAATCCCACCCCCGGCTCCAATTATTTTTTGATGTAATAAAATATAAATATCATTAATCTCTTTTTTTATTTCAAAAATTTCTAAAAGGTGGAATAATGGTTACTGTATATGATGTTCCTGCAGATAAACTAATACAAAAAACTGCTGAAAAATTAAAAGAAATTGGTTTAAAAGAACCAGAATGGGCTAAGTTTGTAAAAACAGGAGTTAGTAGAGAGAGAAGGCCTCAACAGGATGATTGGTGGTATATAAGGTGTGCATCTATATTAAGAAAAGTATATATAAATGGTCCTGTAGGGGTCTCAAGATTAAGAACTGCTTATGGGGGAAGAAAAAA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGCTTATCCATTAAAACAAGGATGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 8 892410-892663 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUK01000001.1 Methanocaldococcus villosus KIN24-T80 MetviDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 892410 37 89.2 35 T...TT..................G............ ACCTTGAATACTTGCTTGACATGGTTAGATATGCT 892482 37 100.0 34 ..................................... CTGGCCATTGATGACATTGACACTTACGTCGATG 892553 37 97.3 37 ........................G............ ATTACAAAATTATGTATATTGTGAAGATATTGATGAT 892627 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 96.6 36 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : GCACTAACTGGTGGAGATAGGGAAGTTCAAAGGACACTAATGCAATTGTTAGCAGAAATGGATGGGTTTGATCCAAGAGGAGATGTTAAAGTTATAGCAGCAACAAATAGATTAGATATCTTAGATCCAGCCATTTTAAGGCCTGGAAGATTTGATAGAATTATAGAAGTTCCACCTCCAGATGAAAAAGGAAGATTAGAGATATTAAAAATCCATACAAGAAATATGAACTTAAAAGATGTGGATTTAGAAGAAATAGCTAAAATTACAGAAGGTTGTGTAGGTGCTGATATAAAAGCTATATGTACTGAAGCAGGGATGAATGCTATCAGAGAATTTAGAGATTATGTAACTATGGATGACTTTAGAAAGGCTGTTGAGAAAGTTATGGGCAAAAGAATTAAAAAAGAAGAACCTGCACATCTTTCAGTATTATATAGATAAACTTTTTTTATTTTTTATATTTAAAATTTATAGATGGCTCTTTTATTTTTATAATG # Right flank : CCCTATGCAACCACTAACTATATTCGCCAAAACTCCTATATAAATCTTTCTTTTCCCATGCGATTTTTCTTACTACCCAATTATTAAAACCTTTATAAAGTTAAGAAAGATTATGCAAATTATTTATAAATATAACGCACAACTGTATCATAAAATATAAACAATTATAACTTATCTAACTAAAATAAAAACAAACTAAACATAAAACCATAAAAATAAAAATAAATAACAAAAATAATTAAAAAATCTCAATTTTAATTTGAAAAAATCATTATTACTTTTTCCCGATTTTCTCATACAAATTTTAACAAGAGGATATATAAAGGCAAGAAAAGTTAATTAAAAAGATTGATATAGTTATTAGAAAATTAATTTATTTTTTTATTTCTTCCTCTAATTCCCACTCTTTTATCCTTTCTCCTGTTAGCATGAATACTATTCTATCACCTATAGAAGCTACAATGTTACCACTTCTCTCTAAATACTTTCCTGCAAAAATG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 9 944886-944339 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUK01000001.1 Methanocaldococcus villosus KIN24-T80 MetviDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 944885 37 100.0 35 ..................................... CTTTTGCCCCGGCACCTTGGGAGGTGGAGCTAGGC 944813 37 100.0 34 ..................................... GAAATATTAGAGGAAAAAGAGATAGTAATGAATA 944742 37 100.0 37 ..................................... TCAGCACCGCAGGGATGAAAAAAATAAAAAAACAAGA 944668 37 100.0 38 ..................................... GGCGGGGTGAAAAAATGGAGTGGTTAAATGAGGAAATA 944593 37 100.0 35 ..................................... GTTGCAATACAGCCCCACTTTCGGGGGCTGGGAAG 944521 37 100.0 35 ..................................... CAAACAAGGGAAGATCCCAGACGATAGTGAACTAA 944449 37 100.0 37 ..................................... ACTTAGAATACGCATTAATCGAGATCAGAAAAGAAGA 944375 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 36 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : TAATTTCTTTTTTAATTCTTCTTCTAATTTTAATATTTTTTTAAACTCTTCCTCATCCATATAACCTAAAAGCCCATTCTTCATAGCCATTTTACATTTCAAACTACATGGAATAAAACCAGAAGTTATAACTATAGCATAAGTATTTATCTCTTTTGCCTCTTTTAAATGTTCTCTATCAATAGCTATTCTAAAATCCTCTGAAAATGATTTTATGCAACATAATGGATAGTTTAATAATTTACCTATTTCATAGTCATCTAACCTTCTATACACTCCTAATTCAAAAGAAATTACTGGATCAAGAGCAGGTCTAACCTTTGGTTTATATTTATTAACAATTTCTATTTGTGTTTTTAACCTGTTTATTAAATACTCAAATTTTATATCATCCATATTTTTTATATTTTCCTCTAATTTTTTAAATTCTGATTTTCCTTCTCTCATTTGTAAAATCTTTTTTAAAATATCCTCCATCATATTAAATCCTTTCTGTTTGT # Right flank : CCTATGCAACTACTAACTATATTCGCCAAAACTCCTATATAAATCTTTCTTTTTCAACAAGATTTTTCTTACTACCCAATTATTAAAACCTTTATAAAGTTAAGAAAGATTATGCAAATTATTTATAAATATAACGCACAACTGTATTATAAAATATAAACAATTATAGCTTATCTAACTAAAATAAAAACAAATTAAACATAAAACTATAAAAATAAAAATAAATATCTAAAATAATTAAAAAATCTCAATTTTAATTAGAAAAAATCATTATTACTTTTTCCCGATTTTCTCATACAAATTTTAACAAGAGGGTATATAAAGGCAAGAAAAGTTAATTAAAAAGATTGATAAGAGTTAATATAAATTTTATTAACTTCCTTAACTAACTCATCAATATCATAAAACACTTTAGGATAATCCAATTTTGGCTTTTCCACAATAATAACTTTAGCATTAGCTTCTATAGCTCCATAAACTTTCTCTTTAAATCCCCCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 10 951911-951439 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUK01000001.1 Methanocaldococcus villosus KIN24-T80 MetviDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 951910 37 89.2 36 T...TT.....................T......... AGGAAATAGACCCGGTAGTTGCGGCGTTACATGAAA 951837 37 100.0 37 ..................................... ATTTTTAACAAACTCCTTTATTCCTATATTTTCTATA 951763 37 100.0 35 ..................................... TGAATTATCCAATATTAATATCGAAGATGGATTTA 951691 37 100.0 36 ..................................... ATATTGTGGAGGCGAGAGTTTGTGTCAGAATGTCAA 951618 37 100.0 33 ..................................... TTGAATGATAATAATGAGATTGTTAATGTTCTT 951548 37 100.0 36 ..................................... TGACAGAAAGACATGTAGACGACCAAGGAAATGCGG 951475 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 98.5 36 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : AAGATCATTAAACTATCATAAAGTTAATTTATATGAAAGTGGGATTAATGAGAAGCATATGATAGAGCTTATTAAATTAATAAAAGATGAAGTTATATCTCAAAAAATAGCTAAAGAGTTAATTGATGAACTTGTTATAAACAGAGGTAAAAAACTACCAACAGAAATTGTTGAAGAAAAAGGGCTTAAAGTTATAAAAGATGACAACTTCTTAGAGAAAGCTGTAGAACAAGCTATAAATGAAAATCAGAAAGCTGTTGAAGATTATCTAAGTGGTAAAAAAGAAGCTTTAAACTTTTTAGTAGGGCAAGTAATGAAATTAACAAAAGGAAGAGCAGAACCAAAAAAAGTTGTTGAGTTATTAAGACAAAAATTAGTTAAATAAACTTTTTTTATTTTTTATATTTAAAATTTATTTTTTATATTTAAAATTTATTTTTTATATTTAAAATTTATTTTTTATATTTAAAATTTAAAGATAGCTCTTTTATTTTTTAATG # Right flank : CCTATGCAACTACTAATTATATTCGCCAAAACTCCTATATAAACCTTTCTTTTCCCATGCGATTTTTCTTACCACCTAATTATTAAAACCTTTATAAAGTTAAGAAAGATTATGCAAATTATTTATAAATATAACGCACAACTGTATTATAAAATATAAACAATTATAGCTTATCTAACTTAAATAAAAACAAACTAAACATAAAACTATAAAAATAAAAATAAATATCTAAAATAATTAAAAAATCTCAATTTTAATTAGAAAAAATCAGTAATACTTTTTCCCGATTTTCTCATACAAATTTTAACAAAAGGGTATATAAAGGCAAGAAAAGTTAATTAGAAAAATTGATATAGTTATTAGAAAAGTTAATTTAACTTTATAATAAATAACAAAAAATTAATTTTTAGGTGATATAATGGGTGTTCCTATAGGAGATTATATACCTAAAAAACCAATCTCATTTGAAGACTTAAAAGGAAAAAAGATAGCTGTTGATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 11 1011285-1010883 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUK01000001.1 Methanocaldococcus villosus KIN24-T80 MetviDRAFT_contig1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1011284 37 91.9 36 TG......................G............ TCTCATAATAAATGGAGAAGCTTATAAAATCAGCAT 1011211 37 100.0 37 ..................................... AACGAACAAATTACTGTTTTGGTGTGGTTCAATCCAA 1011137 37 97.3 37 ........................G............ CTAATTTATCATTAAAATATGCACTTAACAAGATAAT 1011063 37 100.0 35 ..................................... TTATAATGAAAACAAAAGCAAGAGGTGAAAGGATG 1010991 37 100.0 35 ..................................... GAAGATGAGAACACCATCACCCTCACAAGACTCAA 1010919 37 97.3 0 ........................G............ | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 97.8 36 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : GGATAGAATAAGAGTGTGTAAGCTTGTTAATAAATATGGAATAGAATTATCCTCTGGGTTATTAATAGGGGTTGGAGAGAGTTACGAAGATAGGGTAAAACATCTATTTTATCTAAAAAATGAACTTGAAGTAGGAGAAATACCAATAATGGGATTTAATCCATATAAAGGCACACCAATGGAAAATTTTCCAAGATGTTCAGCTTTAGAACAGGCTAAAACAATTGCTATAACAAGATTGATCTTTCCAAATATAAGAATAACCTCTCCCTCTCCAACTATTGGACCTGAATTAATCTATTTCTCATTATTAGCAGGGGCAAGTAATATAGCTACAGTAATTCCCAAAAATTACCCAAGAATAGTTAAAGGAGTAGGTAATCCAAAAGTAGCTAATTTAGATGATACAGTTAAAATAATAGAATCTCTAGGCCTAAAACCTAAGTTAGATTATAATAAATATTACATGTATTTAAAAAGTCAGAAATAGTTTTTTTATA # Right flank : CCTATGCAACCACTAACTATATTCGCCAAAACTCCTATATAAACCTTTCTTTTTCAACAAGATTTTTCTTACTACCCAATTATTAAAACCTTTATAAAGTTAAGAAAGATTATGCAAATTATTTATAAATATAACGCACAACTGTATCATAAAATATAAACAATTAGAACTTACCTAACTAAAATAAAAACAAACTAAAAATAAAACCATAAAAATAAAAATAAATAACCAAAATAATTAAAAAATCTCAATTTTAATTTGAAAAAATCATTATTACTTTTTCCCGATTTTCTCATACAATTTTTAACAAGAGGGTATATAAAGGCAAGAAAAGTTAATTAGAAAAATTGATAAGAGTTATTAGATAATCTATAATCTCCTTAAAATTCTAAGGCATTCAATAACAATTTTTTTAGCAATTTCATCTAATGTATATGGAGTTATTGGTTCAAAATCTTTGATAAACTTTCCAGTACCTACAACTATATGTCCTTCCCTCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : GTTTCCATCCTTGTTTTAATGGATGAGCGATTCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //