Array 1 3475-2452 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NUDY01000004.1 Bacillus pseudomycoides strain AFS008599 AFS008599_98_C7_Contig4_140514, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
      3474	    32	 100.0	    35	................................	ACTAATGTTATTATTCAAAAGCTGGACGTACGCTT 	
      3407	    32	 100.0	    34	................................	ACTTACACCCATTCTTCTCCCCCTTATTTTTCTA  	
      3341	    32	 100.0	    34	................................	ACTTCCTTTCTATCTGCTCATTACACAGCTTACG  	
      3275	    32	 100.0	    35	................................	TTGTCTAGATTTGAACATACAAGAAACACCTCACA 	
      3208	    32	 100.0	    36	................................	ATTTAGCATCACCCAACTAAATTATAGCATTTTTGG	
      3140	    32	 100.0	    33	................................	AGATACAGTGTGTCAAGCAGCCTTAAATATTTT   	
      3075	    32	 100.0	    34	................................	AACATATTACCTACTGGAGCGATTGGTATAGCCG  	
      3009	    32	 100.0	    34	................................	ATTAAAGAGGTCAAAGTGGGCAGAGTCTTAGCTG  	
      2943	    32	 100.0	    34	................................	GGGTCAATATAAAGTATCCTTACATCTAAAAATG  	
      2877	    32	 100.0	    34	................................	AATTGAAGAAGAGTTAGAAGAACCTGTCGAAGTG  	
      2811	    32	 100.0	    34	................................	TCTGGAGCTGTTACCGAGTTTTTTTTTTACATCT  	
      2745	    32	 100.0	    34	................................	ACCTGTAGGTTTTTGAGCATTTCGCTGTAATTTT  	
      2679	    32	 100.0	    34	................................	ACTTCTTTTACAGTGTATGTACCGATTTCTAAAT  	
      2613	    32	 100.0	    33	................................	GCTAAGTGGGCTTGGGGGTTACAATCTAATCCA   	
      2548	    32	 100.0	    33	................................	TTGAATTAAGGATTGCAAAGATGAATTGTTATT   	
      2483	    32	  96.9	     0	...................T............	|                                   	
==========	======	======	======	================================	====================================	==================
        16	    32	  99.8	    34	GTCGCACCTCTTATAGGTGCGTGGATTGAAAT	                                    	       

# Left flank :   TAGATGAGTATCCACCATTTTTATGGAAGTAGGTGTAACATTTGCTAGTATTAATTACGTATGATGTAAGCACTATTAGCGGTGCAGGACAAAAAAGACTGCGAAAAGTTTCAAAAGTATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTAGATGCAACTCAATTTGCTACTTTAAAGATGGAACTAGTTAAAATTATTGATGAAAGTGAGGATAGTCTCAGATTTTATCAGTTAGGTAACAACTATAAAAGTAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAACGTATAGCATACATAAAATCTCTAGTACATTCGCACCTAAATTTTCATAATTTATGATTAAAATTTATGATTTTCTATACAAATTTCTTTATCAAATAAAAAACTTGCATACTTTTGAACAGAATTAACGTATTTGTGTATTATTTTGAACACAAATCGCA
# Right flank :  ATTAAGACAAGCGGATTTAGCTCATGATCTAAATGTCGCACCTCTTTTTTCTATCCAAATAGACTTCACCAATTTCTTAATAAAACAAGCTCTTGTTCTACAATATTACTTAACTACTTTGGCTTCCCAATTGAGACGCCTACTGCTTGCTATAAAAAATTTCATATTTCGACTCCTATTCTTCTCTTTTTCACCTTTCAAATTTTCCAGACTCCATTCAAATGAAACTAAAAAAGCTGAATCCCTTCGGGCAGAAGAGGTTTCAACTTTTTATTTTTTAGTCATAACCTTTGCAACAAGTTGCCATTAGGATAGTGTATCAGCAACTTGTAGCTATTACTATGAATGCTACATTCCACAAAATTATTACATGTTTTTTCATTTTTACTTCTTAATTTATTTTATGATAAAAACTACACCAAAATTACAATTTGTTGAAGGTTTTAAAAATTATAGATTTGGACAAGCTAGATTTATAAATAATGATTTTCCGAGGTGAG

# Questionable array : NO	 Score: 9.25
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCTCTTATAGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.12%AT]
# 	Reference repeat match prediction:         R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.50,-2.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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