Array 1 102518-100086 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVJE01000003.1 Akkermansia muciniphila strain BIOML-A8 scaffold3_size384320, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 102517 31 100.0 34 ............................... TTTTAGTTTAACTTATTTTATTACCTTGTCAACT 102452 31 100.0 34 ............................... AACGTTTTTGGTAGTCACAATGTGGAATCCGTTG 102387 31 100.0 33 ............................... TATCTTGTTGTCAAATGTTTTTTGTTTTTGTAT 102323 31 100.0 34 ............................... ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 102258 31 100.0 33 ............................... CTATTGTTTAATGTTTAGTGTTTTATTGTTTGG 102194 31 100.0 33 ............................... CATGTCATGCCGTTTTCGTTGGTTTTCAGTGGA 102130 31 100.0 35 ............................... ATGATTTAGTTTCCTTTCTTTTAGGGGGTTATGCG 102064 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 101999 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 101934 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 101870 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 101805 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 101740 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 101675 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 101610 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 101545 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 101480 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 101416 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 101351 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 101286 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 101221 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 101156 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 101091 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 101026 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 100961 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 100896 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 100831 31 100.0 34 ............................... TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA 100766 31 100.0 34 ............................... TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG 100701 31 100.0 34 ............................... AGCATCTAAAATATGTGCGTAAGCTTCGACACGG 100636 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 100571 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 100506 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 100441 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 100376 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 100311 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 100246 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 100181 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 100116 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 38 31 99.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 386908-381182 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVJE01000001.1 Akkermansia muciniphila strain BIOML-A8 scaffold1_size505100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 386907 33 100.0 34 ................................. AGGAGAATTGTTGTAACTGCTTAATGGTTATACA 386840 33 100.0 34 ................................. ACCCGTAGGTAAAATAGACCAGACCGCCGTTACA 386773 33 100.0 34 ................................. GATATATTTGCATGGGACGTTGCCCCCGCCCTCG 386706 33 100.0 34 ................................. ATCCGCAATGTTAAAGGCTCTACGGGCGGCGTAG 386639 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 386572 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCTTCCCATGTGTGC 386505 33 100.0 34 ................................. TCCATCTTGCAGTTTGATTTGAGTGATCATGATT 386438 33 100.0 34 ................................. AGTGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 386371 33 100.0 34 ................................. CCCGGTAGGTAAAATAGACCAGACCGCCGTTACA 386304 33 100.0 33 ................................. TGAGACGTCATAGTTAACGCCCTGCCACATGTG 386238 33 100.0 34 ................................. TTTAGTTAGTGGTTTTGTTGTCCGGGGGTTGCCC 386171 33 100.0 34 ................................. CGTCACCTATGGGGCGGGGTTGCCGGGTGATAAG 386104 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 386037 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 385970 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 385903 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 385836 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 385769 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 385702 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 385636 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 385569 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 385502 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 385435 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 385367 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 385300 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 385233 33 100.0 34 ................................. AGAAGGGCCGGGGTTAAACCCGGCTGACTAGCTT 385166 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 385099 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCCTGCCACATGTGC 385032 33 100.0 34 ................................. TCCATCTTGCAGTTTGATTTGAGTGATCATGATT 384965 33 100.0 34 ................................. AGTGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 384898 33 100.0 34 ................................. CCCGGTAGGTAAAATAGACCAGACCGCCGTTACA 384831 33 100.0 33 ................................. TGAGACGTCATAGTTAACGCCCTGCCACATGTG 384765 33 100.0 34 ................................. TTTAGTTAGTGGTTTTGTTGTCCGGGGGTTGCCC 384698 33 100.0 34 ................................. CGTCACCTATGGGGCGGGGTTGCCGTGTGATAAG 384631 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 384564 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 384497 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 384430 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 384363 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 384296 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 384229 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 384163 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 384096 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 384029 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 383962 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 383894 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 383827 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 383760 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 383692 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 383627 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 383559 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 383493 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 383427 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 383360 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 383293 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 383226 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 383159 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 383092 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 383026 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 382959 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 382892 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 382825 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 382758 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 382691 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 382624 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 382557 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 382490 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 382423 33 100.0 35 ................................. TCCTATCGAACGCACGTTGCCACCATTGACCGAGC 382355 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 382288 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 382220 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 382154 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 382087 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 382019 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 381952 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 381885 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 381818 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 381750 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 381683 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 381617 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 381550 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 381483 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 381416 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 381350 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 381283 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [381260] 381214 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 86 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //