Array 1 4148-3144 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNG01000102.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 41567 SEEH1567_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4147 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 4086 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 4025 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3964 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3903 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3842 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3781 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3720 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3659 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3598 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3537 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3476 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3415 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3354 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3293 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3232 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3171 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50948-49284 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNG01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 41567 SEEH1567_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 50947 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 50886 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 50825 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 50764 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 50697 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 50636 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 50575 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 50514 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 50453 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 50392 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 50331 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 50270 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 50209 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 50148 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 50087 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 50026 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 49965 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 49904 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 49843 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 49740 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 49679 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 49618 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 49557 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 49496 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 49435 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 49374 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 49313 29 96.6 0 A............................ | A [49286] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //