Array 1 2617618-2612166 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019967.1 Rhodopseudomonas palustris strain YSC3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2617617 32 100.0 33 ................................ CACTGGCCGGCGGCGCGGGCGCTGCGGACGTTG 2617552 32 100.0 34 ................................ GCCGCCCTGTCCGACGTGCTCGCGCGCTATCCGG 2617486 32 100.0 35 ................................ AGTTTTGTCCGGATCGACCAGTCCCGCGTCCGAGG 2617419 32 100.0 33 ................................ CACTACGTCATCAACGAAGCGTTCCCTGGCGAT 2617354 32 100.0 33 ................................ GAGACGCCCTTGTCGAGATAGTCGAGCAACGAA 2617289 32 100.0 34 ................................ GCCCGCGCGCTGCGCGACTACGCGGAAGCCAACG 2617223 32 100.0 34 ................................ AATCGTGACTGAGGAGACTGAGAACATGGCGCGC 2617157 32 100.0 34 ................................ GGGGTGTTCGGCGTAGGCACTAGATATTCGCGGC 2617091 32 100.0 35 ................................ TGGTCCAGCAACTGCAATCTGACCACCGAGCAACG 2617024 32 100.0 36 ................................ GCACAGTCGCTTGTGGTTCCGGCCTAAATGACGACA 2616956 32 100.0 34 ................................ CATCTCGTGGCGCGGTGTCCATGTGACGTCGGTC 2616890 32 100.0 33 ................................ ATGCGGCTCTCGACGCTGAAGCGGATGCAGATC 2616825 32 100.0 34 ................................ CGCGATCTGCGCGGCCAGTTCTTCCCGGCGCTGC 2616759 32 100.0 33 ................................ GCCGCATCGCCGCGCGGCTGCGCAAGGCCGCCG 2616694 32 100.0 35 ................................ AAATTTGGAGACGCCAGATGGCCTCGAATTCCGAC 2616627 32 100.0 34 ................................ GGCCAGACCGTGAACGAATGTGACCCACCGTCCC 2616561 32 100.0 35 ................................ GCGACGTCGACCCAGCCGTGATAGTTGGAGTATTT 2616494 32 100.0 35 ................................ ATGCGGGAGTGGTGCGAGTTCGACCGCGGAGACGG 2616427 32 100.0 35 ................................ GCGTAAGCCTGAAGAGGCCTATCAGTTCTGCGAGC 2616360 32 100.0 35 ................................ AGATCATGGTGGATGAGGCGATCAAGCGCCGGAAG 2616293 32 100.0 33 ................................ CCCAAATGGCGCGAGGCTATCGCTGCCCGCCAG 2616228 32 100.0 34 ................................ ATCTGCGGCGGGGATCATTGCCCGCCGACGCCGA 2616162 32 100.0 35 ................................ CTCGGCTCCTCGAGCGACATGCTGCCGGTCGGCAA 2616095 32 100.0 33 ................................ AGCCATGACCGATTCCGATCGACTTGCCGCCCT 2616030 32 100.0 34 ................................ GCCGGCAGCGCTGCCAGAATGCCGGCGGTCACCT 2615964 32 100.0 35 ................................ ACCTTCGTGGCGGAGCGTACCAGGCGCTGCCCCAA 2615897 32 100.0 37 ................................ ATGACGCCGGCGCGGGTCGCCGATGCGGTGGCGTCGT 2615828 32 100.0 33 ................................ ATCATCGAGGGCGCGCGGGCCTTCCTGCGGACG 2615763 32 100.0 35 ................................ CGTCGCGCCAAGCCGGACGGACTGTACAAGCCGAA 2615696 32 100.0 34 ................................ ATCATCGAGACCGCAACTCACACCATCAACAAGC 2615630 32 100.0 35 ................................ TGCGGTTATTGGGCCGTGCGCGAGAGCATCAGCTA 2615563 32 100.0 35 ................................ CAGGACCAGCACCGCCGCCGTGGTCGTCCGGCGTG 2615496 32 100.0 33 ................................ CTTCGCGCGCTCAATTGGGCGTTCACGCAAGAG 2615431 32 100.0 33 ................................ TCGCAATCGTCGACCAGTCTCGCCGATGCACTG 2615366 32 100.0 35 ................................ ATCGCCGAGGTCGCGGCCGATCAGGATGCGGCCAA 2615299 32 100.0 34 ................................ GCTGAAACCGGCGTCGTATCGAAATGGTCGGATG 2615233 32 100.0 34 ................................ TGCGGGCTGTGGACAACCGATCGGATCAACCTGG 2615167 32 100.0 34 ................................ GCATGCGGCAGGTGTCTTCCGGGTTCCTCGGCTT 2615101 32 100.0 34 ................................ GGCTTCAAGGTTGCGCTTCCGCGCCGATCCGGTA 2615035 32 100.0 34 ................................ ACAAAGAGGGTGCAGACCTTTTCGATGCGATCAT 2614969 32 100.0 34 ................................ ACGATGACCGCGGCGCCGACAATGATCAGCACCA 2614903 32 100.0 35 ................................ GATCGTTGGGAAGTCGAGATCAGCGCGCGCGACTT 2614836 32 100.0 33 ................................ TTTCACATGCATCATCATCCGCAGGTGCGGCTG 2614771 32 100.0 34 ................................ GCCGACGCGCTGCATTGGGTTCTGACCGGCCGAA 2614705 32 100.0 34 ................................ GATCGTCGAGGACAAACCAAATCTCCGGCGACAG 2614639 32 100.0 33 ................................ CTCCGGCTGCACTTCGCCGTATCGAACCTCGTA 2614574 32 100.0 34 ................................ AAGTACAAGTTGCCGGTCGCGCTGTCCAAGTAAC 2614508 32 100.0 34 ................................ ACGATGGACGGCAACGCTACGCAGGAGGTGACGT 2614442 32 100.0 34 ................................ ACGAGTAGGTCGAGAACCCCCTCGGCCAGTTCGA 2614376 32 100.0 35 ................................ AGGTCGACGTCGCTCACCACCCCGGTGCGCCGCCT 2614309 32 100.0 35 ................................ GCGCTAAAGACCGACGTTGCCAAAGCGACGGACTC 2614242 32 100.0 35 ................................ AATGGGGATTTGTCTTTGTCGGCTTGATGTCGGCG 2614175 32 100.0 34 ................................ TTGTCGGCGGCAGCAATGTCGGCAATGGCCCTGT 2614109 32 100.0 34 ................................ GATGCCACGCACCAGACGATCTCGGACGTCACAG 2614043 32 100.0 34 ................................ TTTCCGATCGTCAGTCATGGGTTTCGTACCAGTC 2613977 32 100.0 35 ................................ CGTTGACCTTGCCACCAGTAAGTGTTGGCGTGACG 2613910 32 100.0 34 ................................ TCACTGCAGCCGTGGCGCGTATCTCTGATAGGGG 2613844 32 100.0 34 ................................ GCCTACAATAGGAACTACCGCACTATCGAGCATA 2613778 32 100.0 34 ................................ GGCCGATAGCTAACACCAGTGGTGACACACCATG 2613712 32 100.0 33 ................................ TATGCCCGCGCCGACAGCTTCTGGGGCAAGGTC 2613647 32 100.0 34 ................................ GCCACGACGCGCGACGGCTTGATCACCTGATAGC 2613581 32 100.0 35 ................................ GCGGATTTCGCGCCGAGTACCGACCCGGTTGACGA 2613514 32 100.0 33 ................................ TCCCCTGATGGGACGCGATGCGCGGTCGCGCAC 2613449 32 100.0 34 ................................ ACCAAAGAGTACGAGGAAGATCAGCAGTTGCTCA 2613383 32 100.0 34 ................................ CTTCGCGACGCCACCCATGCGGCGCAGCATCACC 2613317 32 100.0 34 ................................ GCCCAGGTCGGGATGTCGGCGGTGGTGTACATCT 2613251 32 100.0 33 ................................ AGGATCGGATCGACCAGCTCCTCCCAATCGGCC 2613186 32 100.0 33 ................................ TTCGCCATACTCGCGCGACGCATCGATCGCACG 2613121 32 100.0 33 ................................ GCCGACGCGCACCCGCTCGCCGCCTTCAAGACC 2613056 32 100.0 34 ................................ GCCGTGGCGCCGATCCACTACAAGCCGCCGCATG 2612990 32 100.0 35 ................................ AACCAAAGAGTTAAAGCGTTACCTCCCCCGAGCGA 2612923 32 100.0 34 ................................ AATTCGACCAACACCAGCTATCTCAGCAAGGCCG 2612857 32 100.0 33 ................................ GACTTCGTCGCTGATCTGCGCCGCACGTAGTTT 2612792 32 100.0 35 ................................ CTGGACAGTGGCCATCAGGCCGCCCTCAGCCGGAC 2612725 32 100.0 33 ................................ CCATATCTTCCGCCTGGGCAGGTGTCGGCAGTT 2612660 32 100.0 34 ................................ GACGTAGTCACGCACGATGTAACCGCGTCCCCAC 2612594 32 100.0 33 ................................ ACCATGCCGGAAGAAGCTTTGTTTGATGCGCTG 2612529 32 96.9 35 ..........A..................... CTCGACGCCCGCAACAAGCGGATCGGCGATGCGTG 2612462 32 100.0 33 ................................ CGTGAGCGAGCGCGTCTGTTCCGCCGTCGGCGT 2612397 32 100.0 35 ................................ CCTTATTGGCCGTCGCCGCGCCGCCAGTGCCACCG 2612330 32 100.0 34 ................................ TGACAGGTGAGCATCCAGGGGGTGGTGGCGTCCC 2612264 32 100.0 35 ................................ TGAAACGGCCGGACGATACGTTCCATGCTCACGGC 2612197 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 83 32 100.0 34 GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Left flank : GAGCGCGTACGATCGACAGGTGCCGCGATGCTCGTGCTCGTGACTTACGACGTTCGTACCAGTGAGCCCGGCGGTCAGGCGCGGTTGCGGCGCGTCGCCCGGGCCTGCCAGGACTATGGACAGCGTGTGCAATATTCGGTGTTCGAGATCGAAGTCGACCCGGCGCAATGGACAGCGCTGCGCGCGCGGCTCGAAAGCCTGATCGCGCCGAAGCACGACAGCTTGCGCTATTATTATCTGGGCGCCAACTGGCGCCGCCGCGTCGAGCACATCGGCGCCAAACCGGCGACCGATTTCGGCGAGCCGCTGATTGTCTGACAGCACGCGCGAACCACCAGCACACACGCCGCCCCCGGAACCTTCGCGCCGGCACAAGCCTCTGACGCACAAGTCGATTTTCGTCCCCCGTCGTGCTTTCCCCGCAATCCCTCCCCGCCTCCTCTGAGGTTCGCGCCGGCCAGCTCACTTTGCTTGCAGCGATAATCGGTTATCGTCCGGCT # Right flank : CTCGCAATCGCGAGCCAATGCTCTAGTCTAACAGGATCGTAGTCATCGGTCTGCGCGCGAGCATCCAGCCGCGCCAGAGTCAGCAGCTGGCGCACCAGCAAGCATTCAAGGGAGGCATGAATTAGCTCTTGATCGAAGAGCTCCATACTATTTTGAAAGGACCTCGATTACGATCGACCTCAAATACTAGGCGAGCCCGCGCCTTGGCAGGGGCGACGACCTCCTTCAGCGTGGCGTCAATTTGCGGTCCTTCTAGATCATCTTTGGCGCCAGCAACTTCAACCAATTCGCTATCTCTATCGTTCGCCTACGCCGATCCACGACATCGACAGATAATAACGGAGGGTGTTGTGCTCGACCGCCATCGCTGTCACAAGAATCCATCGCATTGACCAATTCGGCAAGTTCGCCCTCGCTGCTGAAGGCAGCTTCCGCGACCAAGCTCGAAGCATTGCGCCGCAAGATCGACGCCATGTAGGGCAGTTCAAATTCGGGGTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //