Array 1 229050-230623 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAYI01000001.1 Parabacteroides distasonis strain 8-P5 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 229050 33 97.0 36 ................................C TCGCTCTCCTCATCTACCCACAAATCCGGAAACATC 229119 33 97.0 34 ................................G AAGATATTGGCCATAGCTGATGGTCTTAATGACG 229186 33 100.0 34 ................................. TTATCAAGTTTAATTTATTTAATATTTATAATAT 229253 33 100.0 34 ................................. CGATCTGCAATATGTATATCTCACCGTATTGCAC 229320 33 100.0 33 ................................. CTTGTAAGAATTGTTTGCTTCATCTGGTCTTCG 229386 33 97.0 33 ................................A ATAAGTCATATATGTATTTCGGGACAGGGTATC 229452 33 100.0 33 ................................. CGTTAAGGATGATCGCAGCTACCGTACTAGGGC 229518 33 97.0 36 ................................G TCTGGCGACGATGCCCAGATTGGTTCGTCTGGCGAC 229587 33 100.0 33 ................................. TGATCGACTTATACACTTGCCTAATACAATGTA 229653 33 97.0 35 ................................C GACAATGTTATCCATGATCCTTTTGAGGCTTTTGC 229721 33 97.0 35 ................................A TCCCAAGAATAATAGGTAGTATAAGCTTTGCCCTT 229789 33 100.0 35 ................................. CTCTATCACCCTTGACTCAGGATCATTCCATGATC 229857 33 100.0 32 ................................. TTAGTTGCTTTAGCTAAAGACAAAGAAGTAGT 229922 33 97.0 34 ................................C ATTTAAATTGTTGATTATCAATGATATAAACCAA 229989 33 100.0 35 ................................. CATAAACGCTTTGGATACAACGAGCCTATAGAGTT 230057 33 97.0 34 ................................A CAGTAGCAGAGCTATATTCTAAGTATAAACAAGC 230124 33 100.0 32 ................................. ATAAACTTATAACCATCTCTTTCTGTAAGTTC 230189 33 100.0 34 ................................. TGCTCGTGGTGCCGCTGTGGATAATCTAATGAAA 230256 33 100.0 35 ................................. ACTGTAACTAATTTTGTTGGTGGAACATATTGGGA 230324 33 100.0 34 ................................. GTAGACCTCGATGTAATCAAGATTAGGCTTATAG 230391 33 97.0 34 ................................G CTTATGAGTATGGGAAAAATTCCGTTGATGATAA 230458 33 97.0 33 ................................C CGGAGGTTATAGGAACGGCTAGCATGCCCGATT 230524 33 97.0 34 ................................A TAGAATAATTAACATTATCGTAGAAGTAGGGGCA 230591 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ==================================== ================== 24 33 98.5 34 GTCGCACCCCGTGTGGGTGCGTGGATTGAAACT # Left flank : TGATAATTATCCGGTATTTTTAATAAAATAATATACGATTATGTACATTCTTGTGACTTATGATGTAGATACAACGAACAAAGAAGGAGCTCGCCGCCTACGGCATGTGGCTAAGGCTTGCATAGATTATGGCCAAAGGGTACAGAATTCTGTCTTTGAGTGTGAGGTGACAGAAGCACAATATTGTCTCTTGATTGAACGAATCAAGGGTATTATTGATATGTCCCTTGATAGCGTTAGATTTTATATTCTCAATAAAAACGAGAATAAAAGGGTAAAAGTGATAGGTGTTGAAACTGCTTACAAAGTTAATAATGCTCTTATCATATAATTTATGCGAATGTGGAGTATTACGAAAAAAGTAGTATTTTCGCACCCCTTAATAATTAGCAGATTAACCCGTTTATAAGGCGATTGCAGCCATTAAGCTGAAATAAAAATGAGAATTCGCATATTAATAGGTCTAATTTATTGACTTATAATATGTAACTTTATACAGG # Right flank : ATTTGTAAAGCGCAAGCTTTTTCATAAAAGATATACTTACTTACGTGATGAAGTATATCTTCTATGGGACTTGAAGTGTTCTTCTGCGACGAAGAGATTAGTACTTCGTAAAAATAACTTTTTAAAGTCACTGACTCTGACATATAATTTCGCTTAGTTATTTCTGCAAAAATCATTCATATGTAAACAAGTTTCGTATATTCGCGACCTTATAATAGTTTAAATATGGCAGAGGAACTACGGATTAAAAACGGTGATAAACAGGAGATGTATGAGACATTGCTCCCGCAAATCGCCTCATTGGTAGGTAACGAGACCGACCTAATCGCTAACATGGCGAACGTCGTCGCGGCACTCAAGCAGACTTTCGGTTTCTTTTGGGTAGGTTTCTACCGGGTCATAGACAATCAGTTGGTATTAGCGCCTTTTCAAGGCCCTATCGCCTGCACACGAATCAAATACGGAAAAGGGGTATGCGGCACGGCCTGGAAGGAGACCCA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGTGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 352505-352980 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAYI01000001.1 Parabacteroides distasonis strain 8-P5 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 352505 36 100.0 24 .................................... ATCAAAAGGTCGTTCTACAGGGTG 352565 36 100.0 27 .................................... AGTATGGGACAAAGTAAATGACGTTAA 352628 36 100.0 27 .................................... ATGCTCGGAGTTATGCAGTCCAATGCT 352691 36 100.0 29 .................................... AAAAGGCCTCATATCCTCACGGACGGAGA 352756 36 100.0 27 .................................... AGGGACAGGTTCCGTTTGATACATTCT 352819 36 100.0 28 .................................... GTTAGTGCTTATGGTGAGAAATTGGCTT 352883 36 100.0 26 .................................... TTTGAAAACAGCGTATAAGAACCAAT 352945 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 8 36 100.0 27 GGCTATAAGCCTTGTATAATTTCTACTATTGTAGAT # Left flank : GATTTTCAAAGATGCTTACCAAACATGGAGCCATCCGACTACAAAACTCAGTATATGAGATAAATAACACAAATCGGGTAATAGATAATATGATTACGATAATAGAGGAAACTTTTGCAAAGAAGTTTGGAGGTGGCGACAGCGTGATCATTTTTGATGTCTCTACGGTAAAGTTAAAGAAATATGGCAATGCCATTCATCGTGATACGGATATCGTATATTTTTGATTGGTCTAACGAGTTGAGGATGTAAATTAAACTGTGTTAGCAAAGTTAATATTTTATTTTACTCTTTGCTGACACAGTTTATTTTACACTACCAATGAGTTTACAAACCTCAGTCTTTACATGCTCTAAGGGCAATCGTTTGTTCTTTGTGTATGAGTATTTTATGCATTTTTATAGACCGTAGAGAATACAGAACCCTCTTATTTATCTTTTTATTTCCCTCATGTAATTATTTGGTTAATAAAAAAATAATCGTACCTTTACAATACAAGA # Right flank : TAAATACACACGGATCGTCCAAGGCTTCCACACCCCAATTTTTTATTTCGCCTAAGAGAACAAAAGCCGAAACAAACAGAAACAAATATTTCTTGAACCTTATGGAAAAGTCCTTACAATAATATACTTCATTCAACGACAGAGAATGATCGTTCAGTGGCACCAGACAAAAAAAGCACACTTATCTTTCAAGGAATAAAACAGTTACAGCACAAGAACACGAACGAATCCTTAAGACTATCGACAATAACTGAGTCAGCGGAAATATCTGATGCATACATATATTTCACCAGCATAGGCACAAACCATAAGCACTAGTACTTAGCGTCCACACTGATAGAGCTTACGGCCCATGCCTATAGAGGCATTCTGCAACACCGATACTCATATAAATGGGATCACTTTTAATGTGTTTAACATGTTATATGTACCAAATATTTCCGCTGCTCCATTAACCATCAGTAGAAAATCTATTCAACAAAAAGAATATAATCTTGGCT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTATAAGCCTTGTATAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 66944-69186 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAYI01000015.1 Parabacteroides distasonis strain 8-P5 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 66944 37 100.0 36 ..................................... ACGCTCAACCTCAACGTAAGCGCAAAATATATTATC 67017 37 100.0 34 ..................................... TTTTACTGTACGCTTATCCCGACTAACATATTGG 67088 37 100.0 36 ..................................... TTTATCAATCTCCTTTCTTGTCATTATATTTTACCC 67161 37 100.0 37 ..................................... TTATCTGCCTTAATATTATTTTCATTTAATATACTGT 67235 37 100.0 37 ..................................... GCACCTTGTCTATATCCTTACCTATCATTATATTTGC 67309 37 100.0 37 ..................................... TCAATAATTAAAGATCTTTCCCGTTTAGTCTAGTCCA 67383 37 100.0 38 ..................................... TGCAATGAGATTAAACGTATACCGTTTGATAGGAACGG 67458 37 100.0 38 ..................................... TGCTATTAAACAATCTGCACCAAGATTTTATTGCCCCC 67533 37 100.0 37 ..................................... TTTTCTCACTTGCTTTTTTTACCTCGTTTTGTACTTT 67607 37 100.0 36 ..................................... TATTTCCACCACCTTATCCTCTGATAACTTTGTGTT 67680 37 100.0 35 ..................................... CATTTAGCTATCAGGTTAAATGTATAATTTTTGAT 67752 37 100.0 37 ..................................... CAATCCGGTTGTTGTCCGTCACTTCCGTTTTGTATTT 67826 37 100.0 39 ..................................... TCTTCAGATAACTTTGTATTTTTATCTTGATCTTGATTG 67902 37 100.0 38 ..................................... TATGGAGGCCTTTTGGTGTCCACATATACAAATATAGT 67977 37 100.0 35 ..................................... TGTATTACCAACTCCTTATCCTTGGCCAATGACAC 68049 37 100.0 35 ..................................... ATCTTTCATTATTGTAAATAACGAAATAACCGCTT 68121 37 100.0 37 ..................................... TCTGATAACTTTTTATTTTTATCAGCAAAATTATTAT 68195 37 100.0 37 ..................................... ATAATCTTTGTAATTTTAAAAGTTTGAATTATGTGAA 68269 37 100.0 37 ..................................... ACGTGGTAGTATCTCCTTACATAATTGTATCACTACC 68343 37 100.0 39 ..................................... CGTTTATCATTGCCATTATAAGGGATGTAATACACACCA 68419 37 100.0 34 ..................................... CGCCTTGTCTATTTCTTTGTTTGTCATTAGATTT 68490 37 100.0 36 ..................................... CCAAACAGAATACCCTTGTAAGGGATGTTATTTGTT 68563 37 100.0 38 ..................................... ATATTTTTAATTATATTTTTTACCATATCTTTTTTATG 68638 37 100.0 38 ..................................... TATAGGTTTGCGCACCTATTTTAATTGTTTTTAAAATA 68713 37 100.0 36 ..................................... CCTCCAGGTCTCGGCGGCCAAGGTTGCTGTTGAGCC 68786 37 100.0 34 ..................................... TGTTCGTTCATATCGGTCCTTCTTTCTGTCACAT 68857 37 100.0 37 ..................................... TCCTATCATATCCAAATACCCATATCTTTACAACATC 68931 37 100.0 36 ..................................... TAATACTCCCTTTCTACTTCCTTATATGAGCAGAAG 69004 37 100.0 37 ..................................... GCTTACATCGCTTGCCGCTCCCCCCAGCCAAATTTTT 69078 37 97.3 35 ....................................T GCACTTATTTCCGCTTTGTGTAACTTTTCAAGGTC 69150 37 86.5 0 ....A................T..C........TA.. | ========== ====== ====== ====== ===================================== ======================================= ================== 31 37 99.5 37 GTCAGAGAGGTAGTTCCATTAGAATAAGGATTAAGAC # Left flank : AAGGAATAACTTACGGTTTGTCAAGTGAACAACTTGCGAGTTCCTCTAGCCACTAACTTATGGCTTGGAAAGCTATTTACAGATGGCTTCAAACTATCATTTTGATCGCTTTGATGGTTCTTTATATCGTTGTTTATTATGCGGTTAGATAAAAAATGGAGGATTTGTGAATTGTTTTCTTGAATGCACGTGACTCGCCCTCCGGCAAGGGATTCCGGTTCTTTTTGACGGTCGGCAAGTAACTTAACTTCATCGACCAAGTATCTTAAGATACTTTGCCAACACAACTAAGATACTTGGTCGATGAAGTTAAGTTACTTTGCCAACTAGGGAATTTTGGTGCGGTTGCCCTAATTTAGCTCAAATCGCTCTTTAACTTATTGAAAAAATCACTACCTTCGCAGTCTCTTAAAAACAGGTTAATATTTGTGAATTAAAGAGTGGAAGTATATGAATTTCTAAGATATAGATTTGGAATATATAGGTTTAAGAATTTTGCC # Right flank : CAAATTCACCAAAATCTCGACTTTCCCAAAGAATTGACAATTTGCTATCCAAACCCTTTGAGAATCGAATATTTCGGGGTAAAGTACATCTCGCTTCCAAATTCGCAAGAAAAAAATAGCAATGTACTGTTTATTAACTAGATGCTGAAAAAGCAGTCTTTCATTTGAGCGAAAATAATTCACCCTAATTCCTATCACGGCAGTTGTTTGGACGTTTTTTAGGATCACGGCTGGGTTGTAACAAGGTTAGAATGCTTATTCAAGACTGCTGATAACCCTATTCTTGGCTACTTTCGATGCCCAACGACAGTACTGGCGTGTTCCGAAACGACTACCGGAACACGCTCAAACCACTACTTGTGCACATGAGCCATGCTATTTCTACCCAAAAACGAGCCTTTCGTCTCTCTATTCTCCCTTATTTTATCAATTTGCCACAAAACACTTGTCACAAAACACATCTTTTGGAGAACAAAATGACAATAAATGTTGTAGGATTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGAGGTAGTTCCATTAGAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //