Array 1 684628-683170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJJ010000001.1 Listeria marthii strain FSL W9-0621 NODE_1_length_948050_cov_62.733430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 684627 29 100.0 37 ............................. CATAACGAATAGGGATTTTATTTTTGATGACTAATTC 684561 29 96.6 36 ....C........................ GGCGACTAGCGTAGACAATTACAAATTAGCAGAGCA 684496 29 100.0 36 ............................. GAAAGCTGTAAATGAAATTCCGAAAGTCATGGCAGG 684431 29 100.0 35 ............................. TCATTTATGGCCATGGCTGTTTTTGCAAGAAATGA 684367 29 100.0 36 ............................. GTATTGATGATGATTTCATATACGACACATTAGCCT 684302 29 100.0 35 ............................. CTGGGTTTAGCAAAAGGAGATACAGTTGGCTTAAG 684238 29 100.0 36 ............................. TAAAGAAGTGAACCCGCATTTTGCTGAAGTTTGGAA 684173 29 100.0 36 ............................. CTTAGAAGCGCTAGAAAAGCAAATTAGCAGCATTTT 684108 29 100.0 35 ............................. GAATTTGACAAAAACGACGCGCCTGCACCTAATGC 684044 29 100.0 37 ............................. TTTATAAGTTGGGATCTGTGAGAAACACCAGTCAAAA 683978 29 100.0 36 ............................. GTTGATCAAAATGTAGGGCGTGGGAAAATGCTTCTT 683913 29 100.0 35 ............................. CTGATCGCTATTAAAGTTATGCAAAACCATATCAA 683849 29 100.0 37 ............................. GGCAATACTCTTATCGCTCCACCAGTTCCGGCGATAA 683783 29 100.0 37 ............................. GAGCTTGCAGAATTTAGCAATTGGGCTACTAAAAATC 683717 29 100.0 36 ............................. ATCCACTTTACGGCATCAATGAGTAGCGGACTATTG 683652 29 100.0 35 ............................. CAAACCTATCAACGTTCGCTAACATAAAATCATGT 683588 29 100.0 35 ............................. GAAGAACAATTCGTGGCAAAGAAATTAGTTATAAA 683524 29 100.0 35 ............................. TCGTCAGAAACGTTTGTAATCCATTTTGACAAGCG 683460 29 100.0 35 ............................. TCTATACGCAACGAATAAACTTTGTTTTCATTATC 683396 29 100.0 37 ............................. CAAATGGGTAAAATCGTATTAGATAAATTTGGTGAAA 683330 29 96.6 35 ...........G................. CGATTTTTTAGACCTTTGACTGCTCCGGCTTTAGC 683266 29 100.0 38 ............................. ATGATATATCGCAGGATAGCGTCATTAGAATTCAATCC 683199 29 86.2 0 ...............C......CC....C | A [683174] ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.1 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATAGTTTTTTCTAGTAGACAACAAAGATGGTTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAAATTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAATGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATTCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATACCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCTCCCGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGCACTTTCTTATTCGCAAGGAGTTCCTTCTCGACGCCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 700047-699562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJJ010000001.1 Listeria marthii strain FSL W9-0621 NODE_1_length_948050_cov_62.733430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 700046 29 100.0 36 ............................. TACGACGATCAAGAAATAGCTAGACTGGATAAATTT 699981 29 96.6 36 .......T..................... AAAATGGACTTTAAATCAAATCCTGTGCGGATGTAT 699916 29 96.6 36 .......T..................... CTCGGTTATTGTGATGCAAAGGTGTCTATGGACGAC 699851 29 100.0 36 ............................. AGATGCTTGGGCAGCGTGGAAACAAACGGCTGTTGA 699786 29 100.0 36 ............................. ATTAAACTGTCTAAATATGAATTCGTTTGATTAGCC 699721 29 100.0 37 ............................. CTCTTAGTTTCGCGATAACACTTTCCACTTTAGCTAT 699655 29 96.6 36 .......T..................... AGTAATGGGACATCAGAGAAAAATTATGTAGACACC 699590 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 98.3 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACTCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCTAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCATGAAAAAGGCTGGGGATCGACAGAAAGATGGGAATGGTTGGGGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGGTTTTCAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CATTTCTATTTCCTATACAAAAAAGCCAACCAACATGATTTAGGCTTATTTTTTATCCCCACGTTAACAATTCCGCAACAAACACACCAAAAACTCCCAATTTCCTCTGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAAGCCAATACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGGAAAAGTAACAAAAGACACTAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGTAAAGAAAGCAACACAATTAGTGAAGTAGAGATCTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGATATTTCAGAACCATGGTACTTAAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //