Array 1 1443-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVYO01000196.1 Streptococcus pseudopneumoniae strain 1213_SPSE 669_17297_225212_478+,157+,412+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1442 36 100.0 30 .................................... ATGGAGCTAGTTTGGTTCTTAAAGATGTGT 1376 36 100.0 32 .................................... TTCTTTTTTCATTTTAAACCTCCATTGGCATA 1308 36 100.0 30 .................................... CGCGAACCTTCTCTAAATACGACTTCAACT 1242 36 100.0 30 .................................... CCAACCTTGAACATCTTTAACCTTTAGTTT 1176 36 100.0 30 .................................... TGTCAGTTCTTTTTCTGTAAAGTTTCTTAC 1110 36 100.0 30 .................................... ATCACCCCTTTCATGGTGTAAAATAGGGTA 1044 36 100.0 30 .................................... TCCATTTTTATTCAATTTTCCAGCCAACAC 978 36 100.0 30 .................................... TCTGAGTTAAAACTCATGTAGCGAGTTCAT 912 36 100.0 30 .................................... AAACGCTACAAGGGAAAACCCAAGGAGATA 846 36 100.0 30 .................................... TAATAACCCGTTAAAAACGTGCCATCACAA 780 36 100.0 30 .................................... CTACAGAAAGGATAAATATGGCAGAAGCAA 714 36 100.0 30 .................................... ACACTATCAAAAATAATTCAATCAGCATAT 648 36 100.0 30 .................................... CTATAACAGTTTCTGGAGATTTTGGACATT 582 36 100.0 30 .................................... CTTTCTTACCTGCATTCAGCAATTCCTTGA 516 36 100.0 30 .................................... ACAAATCAGTATTATGAAAAAATTAGGAAG 450 36 100.0 30 .................................... CGTATTTGCTTAAACGAGTATGGACCAAAG 384 36 100.0 30 .................................... ATTTAGCTTTTGTAGCTTCAAGCTTCTTAC 318 36 100.0 30 .................................... ATCAATGCTTGTAGAAGTTGAACCCCTGCT 252 36 100.0 30 .................................... TAGAAGTTTGGTAGTGGCTATGGAAGACTT 186 36 100.0 30 .................................... CTAGAGAAAGCTATAAAGCTATACATAATA 120 36 100.0 30 .................................... AGTGGCAGTGGGACATTCGTCAACAGGTCG 54 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 22 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGTCCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGGGTCTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAGCCTGACGAGCTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : CCTTTCTTACCTGCATTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 701-71 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVYO01000103.1 Streptococcus pseudopneumoniae strain 1213_SPSE 401_718_9568, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 700 36 100.0 30 .................................... TCTTACCAAGCTTTAGTTCGTATCTGTCAT 634 36 100.0 30 .................................... ACTTCATCGCTTCGGCCATGTCAACGGTCT 568 36 100.0 30 .................................... CTGCGTTATTTTGCAAGCGTTCAGCAAGAC 502 36 100.0 30 .................................... AACAACGCTAACAATGTAAGCTATGCTGAT 436 36 100.0 30 .................................... CGATTGAAGACCAGTACCTTGTTATCTCAG 370 36 100.0 30 .................................... CGTCTAAGACGTATCATGACGGCCTCTACA 304 36 100.0 30 .................................... ATCGAAGAATTTGAAAAATGGTACAATCCG 238 36 100.0 30 .................................... TGTTCCTTCTGATAGTAGGCATCACGATAC 172 36 100.0 30 .................................... AGACCAACCACTATGAGTTTTTCAGGGATG 106 36 94.4 0 .................................CC. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.4 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CATTCAGCAATTCCTTG # Right flank : CATATTAAAAGCTACTCATTGAACTGCACCCCAAAAGTTAGACAGAAAAAATCTAACTTTTGGGGTGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //