Array 1 4071-3770 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEAS01000010.1 Bacillus pumilus SAFR-032 strain DE0317 NODE_10_length_155579_cov_82.552207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 4070 32 100.0 38 ................................ TAGTTGTTCAGCGAAAAAGCTTACGTTATCGCTTAAAC 4000 32 100.0 34 ................................ TTTCAATTGTATCTTCCCTGCTCTTTGATATATC 3934 32 100.0 35 ................................ TCATCCTGTTTTGTAATGGTTTCAATAACTCCAAG 3867 32 100.0 34 ................................ CCTTCAACTTTTGCTTTAATATCAACTTCTACAG 3801 32 81.2 0 ....................A.A...CAC.G. | ========== ====== ====== ====== ================================ ====================================== ================== 5 32 96.2 36 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAGTGCGTGGATTGAAATCCACACGTTTAGTCGATAGTTATTTGACGTACAGTCGCACTCTACATGAGTGCGTGGATTGAAATTACAAACATAATAGCCAATTGTTCTAGATACTGGTCGCACTTTACATGCGTGCGTGGATTGAAATATTGATTCTCTATGTTCTGGTATTTCAATGGCGTCGCACTTTACATGAGTGTGTAGATTAATAATTGCGAAATACATAACTCTGCCTCTCAGTAGTCATGTATTTATTCAGTTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAGATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : GTCTTTGTTTTATACAAATTCAACTACCTATCCAGTTCAAAATCTACACAAAATGAATAATCAATAATGTACTTCCCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCAGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACGAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAAGCTGAAATGTTTTCGTCTTGTTTGGCAATTTTCATAATTTCTGTGTCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAGGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATCGTAGG # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4780-4356 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEAS01000010.1 Bacillus pumilus SAFR-032 strain DE0317 NODE_10_length_155579_cov_82.552207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 4779 32 100.0 33 ................................ ATTTTTTCAAAGGAATAATCATTGGGACCTTCA 4714 32 100.0 35 ................................ GTTGTGTATTTTTCGTTTGCTGTACGGTCAAATGC 4647 32 100.0 33 ................................ TGTTTCCATCCACTCAATCGCATACTCTAAGTC 4582 32 96.9 33 ...........C.................... CCACACGTTTAGTCGATAGTTATTTGACGTACA 4517 32 96.9 33 ...........C.................... TACAAACATAATAGCCAATTGTTCTAGATACTG 4452 32 90.6 32 ........T..C...C................ ATTGATTCTCTATGTTCTGGTATTTCAATGGC 4388 32 84.4 0 ........T..C.......T..A....A.... | T [4359] ========== ====== ====== ====== ================================ =================================== ================== 7 32 95.5 33 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GCCTGAGACAGTAAAGGAAGCATTCAAAGTAGATGTGATGACACCACATCATTCAGACTATAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCGCCTCGAGACGATGACTCACCAACACCGATTCTTTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAGAACAAAAAAGAATCTACCAGAAGAAGTGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGCGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCATGAAACTTGGTGCGAATGTGAGGTGAACATAAAATCTCTGGAACATTCGCACAGTTTCATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGGGAAAATAAAATTCTATATAGAAACTTGAGGGTTTTGACGATTATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TGCGAAATACATAACTCTGCCTCTCAGTAGTCATGTATTTATTCAGTTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAGATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTAGTTGTTCAGCGAAAAAGCTTACGTTATCGCTTAAACGTCGCACTCTACATGAGTGCGTGGATTGAAATTTTCAATTGTATCTTCCCTGCTCTTTGATATATCGTCGCACTCTACATGAGTGCGTGGATTGAAATTCATCCTGTTTTGTAATGGTTTCAATAACTCCAAGGTCGCACTCTAC # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 12647-12413 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEAS01000010.1 Bacillus pumilus SAFR-032 strain DE0317 NODE_10_length_155579_cov_82.552207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 12646 32 100.0 34 ................................ AAGGGTTTGGGGGCGCTGATTGTTTCAACTCCTT 12580 32 100.0 34 ................................ TACACTTCGAGAGTGTCGTTTTTATTCGCTTTGT 12514 32 96.9 34 ......C......................... ATGCAGTGACCTCCTGAATGTATGATGAATTGTT 12448 32 81.2 0 ......CC...T............T..TC... | AC,G,A [12424,12430,12439] ========== ====== ====== ====== ================================ ================================== ================== 4 32 94.5 34 GTCGCATTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCACTGAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACGAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTAGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACCGGCTGATTTATCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGCTGTAAGAGAAGCTGATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTCATGAAGGAGAAAACAAAATCCTATATTGAAATTTGTGGATTTTTACAATCATTCCCTAAAAAATGTTACAATTAGGTCGGAAATCGCA # Right flank : GATTGTGTCTTAAACGGTTATGACTACCTTAAAGATCATCTTCTTACAACACCCTCTTTCAGATACAAAAGCCATCAGAATATACTGTTCATTTGTATAGTGAAAACATGACTCATTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGGCTGACAGGAGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATG # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //