Array 1 21947-22585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUTH01000033.1 Limosilactobacillus fermentum strain 779_LFER 439_22661_290889, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21947 29 100.0 32 ............................. TAGGGTCGGTGCCCCAGTTCATTAATAGCAAG 22008 29 100.0 32 ............................. ATCAATGGAGGTCTTGAGCGGCATGATAACTT 22069 29 96.6 32 ............................C TAAGATGCGCAACTTTAATTGTCTTGGAGCTT 22130 29 96.6 32 ............................C ATAAGAGTCGGTCCATTGAGATTTGTGGTGCT 22191 29 96.6 32 ............................C TGTCGTCGTTGTAACGGAAGGCTAATGTGCAC 22252 29 100.0 32 ............................. ATCCTGTCGGTTTTCCACCCTGGTGGTGAACT 22313 29 96.6 32 ............................C TACGAAGAAGCAAAACGGCTTTATCGGTTAAA 22374 29 100.0 32 ............................. CGAGAAGGTCATATCGGCAAAGGGGTTGCCTG 22435 29 96.6 32 ....................T........ GTTCAGCAAGCAATGCTAAAACATGGGTTTGA 22496 29 96.6 32 ............................C CCAGACTCGGCAAGCGTTGAATATGCACTAAA 22557 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTTCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : ACATGGGCTTTAGTCGTACGAAGGAGTGATATGGTTGAGAGAATGTACGGCCACTACTACTCACCAACCACGGTTT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3400-2902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUTH01000095.1 Limosilactobacillus fermentum strain 779_LFER 1203_4388_98965_234+,...,895_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3399 36 100.0 30 .................................... AATAGTGGGCGCCGTTCCTTTACAATATCT 3333 36 100.0 30 .................................... TTGCCGAACTTGTACTACCTCGTTCGCTTG 3267 36 100.0 30 .................................... GTTAGTGTTGGCACATCGTCTGATCGAACG 3201 36 100.0 30 .................................... TCTTCTGCAGACGTGTGCTTATCAGCGTGG 3135 36 100.0 30 .................................... ATGTCGAACCATTGCGTGTAAGTCTTGCCG 3069 36 100.0 30 .................................... TTCGATGGCTCTATCATATACGAGTTTATT 3003 36 100.0 30 .................................... ATCGGCTAAGTCGTGCTCGTTAAAAATCTC 2937 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTGCTCGGAACTACTGATCTGACACTCATCCAAGAC # Left flank : TACCCTCCGCTTCTGCCAATCATAATAGTTGGATCGGCTTAAACCTAGCTCTCTCAGCATTCCAGAAGTTGATGGGTAGCTTGGTTGTTTCAGTTCATCTTCCACCAACGGGAATAGGTGTGAATCTATTCCCCCAGAATGCGAATAGCTTTTTTTAAGACGTTATTAGCAGCGCGAACGTCACGCAGTTCGCGTTTGAGTTCGGCAATCTCCTTATCTTTTTGCGAAGCATAGTGCCCTGTGCCAACGCCGACGCCTCCGGTCTGCTCGTATTGATTAACCCATTTCAAGAGGGTTGATCGCGATACACCTAAGTGTTCTGCACGTTCATCAACTGATGAATTCTCGTTATCAAGGTAATATTTGACCGCATTCAGCTTAAATTCTTGGTCGTAATGTTTACGTTTTGACAATTATATTTACCTCACTAATCGTACTTTTCCTAAGTATAATTAGTCTCTTCTGTAATTGTCCAATTTCAATTCTAACTGCACTCAACG # Right flank : CGTTGTTTTCTCATTAAAAACTAACGGTCTATTCGTGCCAGTCCACGAAGTCCCGATCAATCCGGTAAATATCCTGTTTGAGTTGTTGTAGAGTTTCTCTCTTTTCTGAGAATTCTACTAATAAAACTGTCAATTCGGTTTTCTCAACAAGAGTAGCGAATTCCTGTATCTGCTCAGATAATAAGTAATTAGCGACATTACAATACCCAAGAACCTGACAGTCCTTTAATTCGAGATGTAATTTTAGATTGGTTTCAATTATACCATAAGGTTGCCTTATTACTTGCGTCAAATACTTGATTTTCGCATATTTGTATAATCTCAAAAGACTTTCGTCATATCTGACCTCCAATGGCAAATCGAATTCGAACAGGGAATCTTGCATTTCTGAGTAAATCTCACGAGCAAGGTCATTCATCCTATCTCGCTTCTCGATACTAAGATTTTTGACAATCATCTTATCGAGTGACGTTTGGTAACTATCAAGTTTGGTTGGATTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCGGAACTACTGATCTGACACTCATCCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //