Array 1 65406-62388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJODL010000019.1 Escherichia coli strain ARS-CC9613 NODE_19_length_91157_cov_52.7728, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65405 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 65344 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 65283 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 65222 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 65161 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 65100 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 65039 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 64978 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 64917 29 100.0 32 ............................. TTCTGTCAGCGCAGGCATACGGCCCGCCTGTG 64856 29 100.0 32 ............................. GCCAGGCGGGAAGCGATGGGCGGTTAACTGGT 64795 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 64734 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 64673 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 64612 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 64551 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 64490 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 64429 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 64368 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 64307 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 64246 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 64185 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 64124 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 64063 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 64002 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 63941 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 63880 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 63819 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 63758 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 63697 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 63636 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 63575 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 63514 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 63453 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 63392 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 63331 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 63270 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 63209 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 63148 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 63087 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 63026 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 62965 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 62904 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 62843 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 62782 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 62721 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 62660 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 62599 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 62538 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 62477 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 62416 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 50 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1281-153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJODL010000002.1 Escherichia coli strain ARS-CC9613 NODE_2_length_490491_cov_55.8568, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1280 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 1219 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1158 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 1097 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 1036 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 975 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 914 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 853 29 96.6 32 ...........C................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 792 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 731 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 670 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 609 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 547 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 486 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 425 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 364 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 303 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 242 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 181 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //