Array 1 429298-430484 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKC01000002.1 Salmonella sp. S115-49642 NODE_2_length_556350_cov_181.417, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429298 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 429359 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 429420 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 429481 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 429542 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 429603 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 429664 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 429725 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 429786 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 429847 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 429908 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 429969 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 430030 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 430091 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 430152 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430213 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430274 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 430335 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 430396 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 430457 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 446655-448395 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKC01000002.1 Salmonella sp. S115-49642 NODE_2_length_556350_cov_181.417, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 446655 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 446716 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 446777 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 446838 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 446899 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 446960 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 447021 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 447082 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 447143 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 447204 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 447265 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 447326 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 447388 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 447450 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 447511 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 447572 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 447633 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 447694 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 447755 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 447816 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 447877 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 447938 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 448000 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 448061 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 448122 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 448183 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 448244 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 448305 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 448366 29 93.1 0 A..............A............. | A [448392] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //