Array 1 304476-305968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUVW010000002.1 Escherichia coli strain S232 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 304476 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 304537 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 304598 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 304659 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 304720 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 304781 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 304842 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 304903 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 304964 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 305025 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 305086 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 305147 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 305208 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 305269 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 305330 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 305391 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 305452 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 305513 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 305574 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 305635 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 305696 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 305757 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 305818 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 305879 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 305940 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 331669-332186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUVW010000002.1 Escherichia coli strain S232 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 331669 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 331730 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 331792 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 331853 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 331914 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 331975 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 332036 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 332097 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 332158 28 75.9 0 .A.........C..T....A..-.C...C | T [332177] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //