Array 1 316162-317776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAR010000003.1 Salmonella enterica strain 205 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 316162 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 316223 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 316284 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 316345 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 316406 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 316467 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 316528 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 316589 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 316650 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 316711 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 316772 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 316833 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 316894 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 316955 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 317016 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 317077 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 317138 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 317199 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 317261 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 317322 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 317383 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 317444 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 317505 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 317566 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 317627 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 317688 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 317749 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 333909-335385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAR010000003.1 Salmonella enterica strain 205 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 333909 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 333970 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 334032 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 334093 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 334154 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 334215 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 334276 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 334337 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 334398 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 334459 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 334520 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 334581 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 334642 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 334704 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 334807 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 334868 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 334929 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 334990 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335051 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335112 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335173 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335234 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335295 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335356 29 96.6 0 A............................ | A [335382] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //