Array 1 58-680 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACASH010000084.1 Campylobacter fetus subsp. venerealis strain NWU_ED23 195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 58 30 100.0 36 .............................. TTTTACTTTTTATTTAATTCCTGGTTTTTTTGGTGA 124 30 100.0 36 .............................. GTTATGTAAAGTAACCATAAAAGCTACCAACATACA 190 30 100.0 36 .............................. GAGCTAAAGGAATACAAAGAGGAGATAAAAGATGTA 256 30 100.0 36 .............................. CCAAGTCAAAAAAAATGGGAGTAATTCGGCTTTAAT 322 30 100.0 36 .............................. GATCCGTGTTCTAGTTATAGCGTCGTGCACTTCAAA 388 30 100.0 35 .............................. CCTTTCTGTTTTTTCATCAAATATATCGCAGAAGG 453 30 96.7 36 .......T...................... CGGAGAGAGCATGGCGCCAGAGGTAGATAACGGGGA 519 30 100.0 36 .............................. TAAAAATGCAAAGCTAATCAAGCAAAAAGTATCAAG 585 30 100.0 36 .............................. TTTAAGCGGTATCAACCAGGATAACGAAATAGTTTA 651 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 99.7 36 GTTTCAACACAAACATTGTCATTAGCAAAC # Left flank : ACAAACATTGTCATTAGCAAACGGTGATTTTATATAACATTTTTGTTAAGTTGGATTG # Right flank : GGTGATTTTATATAACATTTTTGTTAAGTTGGATTGTTTCAACACAAACATTGTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAACATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 616-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACASH010000085.1 Campylobacter fetus subsp. venerealis strain NWU_ED23 196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 615 30 100.0 36 .............................. CCGTAAGCTACATTGTAAGCTAAGTCTTCAAAGACT 549 30 100.0 36 .............................. TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT 483 30 100.0 36 .............................. GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT 417 30 100.0 35 .............................. CGGGGAGCAACGTTAGCAATCTCATTTCCGTCCAT 352 30 100.0 36 .............................. TGGGGATTCGATGAAATTTTTAACTATATAGCATTC 286 30 100.0 36 .............................. TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGC 220 30 100.0 37 .............................. TCCAGAGCTAATAAGGGATTTAGAGCAGCTAAAAACT 153 30 100.0 36 .............................. CGCAAAAAGAGTTGAAATATATAGATAATAGGTTAA 87 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATATAATTTTTTGTATAATCCAACTTCTATTTTATAGTTATTTATTACTCTAAGCCTAAATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCCTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CAATCCAACTTAACAAAAATGTTATATAAAATCACCGTTTGCTAATGACAATGTTTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //