Array 1 86002-84583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFC010000003.1 Bacillus iocasae strain DSM 104297 Ga0454081_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 86001 32 100.0 34 ................................ GAATACACCACGTAAGCGTATCGTCTTGCTCTGC 85935 32 100.0 35 ................................ GATAGAGTCAAAGTCATTATCAATGTAGGTTGAAC 85868 32 100.0 36 ................................ AAGCAATGACTTTCTTCAACTTTTATTGTTAATTGA 85800 32 100.0 33 ................................ TAACTTTTGAGATTGACTATTTGTTTTAGACAG 85735 32 100.0 34 ................................ AAATGCAAAAAGAGTGGTTTTAAAAGGCGACTTT 85669 32 100.0 33 ................................ TCTCATTTGCTGAATCTCTTCAAAAGAGTCATT 85604 32 100.0 33 ................................ CACACCCTAAAACGCCTGGTAAACGCCTACCAA 85539 32 100.0 33 ................................ TATAACAACAAACTTATGTCCTTTCTTTTCATA 85474 32 100.0 36 ................................ ATTGATAACAGTTAAATATAGCTCTGTGATTTCGTT 85406 32 100.0 35 ................................ GCTCATTTCTAATATATACTATACTATATCATCTA 85339 32 100.0 32 ................................ CGCTCGTGGTGTTCCTTGTTGTGACAGTCTTG 85275 32 100.0 35 ................................ TTTTATATTTAAGTACTTTATCGACCAAGTAAATT 85208 32 100.0 35 ................................ ATTTGTAGCCCTTGCAGTACATGACACGAATCCTT 85141 32 100.0 34 ................................ GTTTACTAACGTTTAAGATTGCTGTCTTGCGATC 85075 32 100.0 33 ................................ AAGGGATTGCAGAAAAGAACGGTTATGTTTTAT 85010 32 100.0 33 ................................ ATTTGCTCTGGTATACGGTCCAACACCCTTTGT 84945 32 100.0 33 ................................ TGTAGCTGTTAACAAACGTTTTGCTTTTACCAT 84880 32 100.0 34 ................................ AGTTTGATTTGTATTAGCAAAGCTTGCTGTATAC 84814 32 100.0 35 ................................ TTTTTGTCCCATCCATAAAAATCTATTAAGTGTTC 84747 32 100.0 35 ................................ CATTTTTTCGAGTTAAACCACCGACCGGCTTCGTC 84680 32 93.8 34 ...........T.....C.............. TCATACCTAACTGAGTAATCATTTTTTCTTCTTC 84614 32 87.5 0 ...........T........A..A....C... | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 99.2 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GATGAATATCCACAGTTCTTATGGAAGTAGGTGTGAAGAGTTGCTAGTATTGATCACATATGATGTAAACACAACAAGTAGCGGAGGACAAAAAAGGTTACGTAAAGTAGCCAAAGTATGTCAAAATTACGGTCAACGAGTGCAAAACTCGGTTTTTGAATGCATAGTAGATGCTACACAATTCACCTCTTTAAAGCTTGAATTAAGAAGTATTATTGATGAGAGTACAGATAGTCTTAGATTCTATCAGTTAGGTAACAACTATAAAAACAAAGTTAATCATATTGGAACAAAAGAATCAATTGATGTAGAGGCACCATTAATTTTTTAGTGCGAATGTGAAGTGAACATGATTTCGTAGGAGCATTCGCACCTCAAATATTGTTGGATGTTGTAGAAATATTTAAGTTTAAACACACTGTTCTTTGCTTTGGTAAAGAAAATGGCGAATAGTTGAGTTAGAAATATGTTATTAGAACCATTTTTAACTAAAAATCGCT # Right flank : AAGCAAAGCTGTTTCGTGTGCTACAAGAAAAAACGTCTCACTCTATGTGAGTATTGAAATACCATCAAAACAAGTGGAAAAAATCAGACCGTATAATGGCTCCTCCGAAAATAGACACACAGCAACATGAAAGCAAAAAGCCAATTGTTCCATTAAAGAATCAGATGGAGGCTCATGAAAAACAGTGTATCGAGCAAGCGCTTAAGCAAAGCAACGGAAAAGTCTCACAGGCTGCGAAATTGCTAGGGGTGAGTAGACAAACCTTGCAGTACCGAATAAAGAGGCTGGAGATTAAGAGTAAAGAAGTGACGACTTCATCCTTTTAAAAAAGAGGCAGGGAGAGCAAAGCTTCTATTATTGACATCATGTAAAAACGCTTTAGAATAAAAAGAAGAATCATATATTTAATAGATTATCAGGGGGCTTTATGCATAAGGATAAGAAGTTGTATGAGTATATGTTAGATAAAACGTGGCAGTTAACGGAACAGTGGTATCAAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 93411-91934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFC010000003.1 Bacillus iocasae strain DSM 104297 Ga0454081_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 93410 32 100.0 33 ................................ ACACAAGCAAAGAAGAAGCGCTGAAACTCGAAG 93345 32 100.0 33 ................................ TTATCCTCTTTTGATTTAAAATACAGGGCGTTG 93280 32 100.0 34 ................................ AAAGAAGCGGTTAAACTAGAGGTCGAGCAAGAAA 93214 32 100.0 32 ................................ TAAACGACACCAAGAAGCGCACAATGGAAGGT 93150 32 100.0 34 ................................ ACCTACGGTTTTAAAACTAAGTTGTTGCCCGCTA 93084 32 100.0 34 ................................ TTTCATGCTCACCCGCTTTGTTTTAATCATTCCT 93018 32 100.0 33 ................................ GGTCCTTTCAGACATTAGCGGCAACTTAGGGAC 92953 32 100.0 33 ................................ AACTGTCCCCGCTTATTATGAAAATGCTTGTAA 92888 32 100.0 33 ................................ TCGTGGAAATCCTTCTTCGCCACTATGTCGCCT 92823 32 100.0 33 ................................ GAGAAAGCGGTTGGACAGACATTTAACGCGAAA 92758 32 100.0 34 ................................ GCTTTGACTTTGTCCCAGTTTAAATAAAGCGCAA 92692 32 100.0 34 ................................ AGTCACCTCGTAACCACTGTAAGACGTTGAGTAA 92626 32 100.0 34 ................................ TGACTCATCATCTGTTGTAAAATCAACAACATCC 92560 32 100.0 34 ................................ TAATTGTGAATTGTTATTGATTTCTTTTTCAAAA 92494 32 100.0 32 ................................ TATACGATTTAACATCATTTGTTGTGCTTCAA 92430 32 100.0 34 ................................ AGCGAAGTATTTAACGCCTTGCGCAATAGAAGCG 92364 32 100.0 36 ................................ TATCATCTTGCTTTCATTCCTTGGAAAAATAATGAG 92296 32 100.0 35 ................................ CCTCAAAACATTTGTTTTGAGGACGCTTAGCGCAG 92229 32 100.0 33 ................................ TCCGCAACCGCTTTACGTAACACAAGCGCGTCT 92164 32 100.0 34 ................................ ATAACATGCCTTGTATCATCGTCACAAGGGACGA 92098 32 100.0 35 ................................ TTGTTTGACAGTAATGTTATGTTAGGTTTCTTTAT 92031 32 100.0 34 ................................ ATAGCCAAGTTTTTCTTTCTCAATGACCGCTTTG 91965 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 100.0 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ACGGAGAAGGGAAACAAATTATCGCTGAATTAAATGGTAAAGGAACGATTGAAGAACTTTCAAGATTATTAAAAACAGCTCAGCAATTTACCATTAATATTTATCAACATGAACTACAACACTTATCTCAACAAGACGGGATTGTAAGCTACTTGGATGGACATATTTTTGTCTTAAAGGAAGGGGCTTATAGTGAAGAATATGGACTTAATTTAGAAAATGACAGCTTGATGGAGTTGAACATATTTTAATTGATGGCGTTAAAACCTATTTCCTATAGTTCATAAGGAAATAATGTACCGGTGAAAAGGAATCGCTATCAAGGAGATGGTGCGGATGTGAAGTGCACATGATTTCGTAGGAGCATTCGCACCTCATCATTTGTAGAAGTTTGCCGAATAATTCTAATTTAAGTATTCTGTTCTTTATTTTTGTAAAGAAAATAGCGGGCATTTAGTTGGAAATGTGTAATTAGTAGCCGTTTTTAACTGAAAATCGCT # Right flank : CAGTACGCGCTAAGCCAACTTGAATTTCATCGGCAGTCGCACTCTAAATTCTAAAAATAACAATCTATACAAAAACAGCATGGACAAAAGACACCCTACCATCCTTAATATAAACGATGGTAGGGTGTCTTTTGTGTCTTACTTAATCATATATTATATTTTTCAATCCGCACTTTTAAAGTGACGCTTAATTATACCACACTCTTAAAGTTAACAAAAAGTTCATATAATATATTATTAGAAAATATTTACAATAAAAGCAGTTAAATGTTACTATTATATGGTAATATTTTCATATTTTAAGAGAGGAGGAAACTATGAGAAACTCAATAGAATTTGAATTGTTTGGTAATTATGCTTTGTTTACGGATCCACTTACAAAGATGGGAGGGGAAAAGTATTCCTATCATGTCCCCACTTACCAAGCGTTAAAAGGGATTGTGGAGAGCATATACTGGAAACCAACATTATTAATGGTTGTGGATGCAATACGTGTTATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //