Array 1 6860-7291 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFNE010000041.1 Lacticaseibacillus paracasei strain INIA P272 isolate INIA P272, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6860 36 100.0 30 .................................... GTTGTTTACCTTTCATGCTGATACCTGTGT 6926 36 100.0 30 .................................... TCGATGCGATACTGATGGTTGCGCCTTGGA 6992 36 100.0 30 .................................... AATTCAAAATGGTGGAAGGAAACGACTTAG 7058 36 100.0 30 .................................... AGAATAGACTTCGAGGTATGCAGATCAATG 7124 36 100.0 30 .................................... AAACGGCGACTTTATTAACGTTGATCACAT 7190 36 100.0 30 .................................... CCTTCAGACGAGCAATATCAGAGTTGGCTG 7256 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCAATGGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGACGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGACTGAGATTTCTCTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 889-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFNE010000068.1 Lacticaseibacillus paracasei strain INIA P272 isolate INIA P272, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 888 36 100.0 30 .................................... GTTGTTTACCTTTCATGCTGATACCTGTGT 822 36 100.0 30 .................................... TCGATGCGATACTGATGGTTGCGCCTTGGA 756 36 100.0 30 .................................... AATTCAAAATGGTGGAAGGAAACGACTTAG 690 36 100.0 30 .................................... AGAATAGACTTCGAGGTATGCAGATCAATG 624 36 100.0 30 .................................... AAACGGCGACTTTATTAACGTTGATCACAT 558 36 100.0 30 .................................... CCTTCAGACGAGCAATATCAGAGTTGGCTG 492 36 100.0 30 .................................... ACTGGAAGATGCCAATGCTGTCGAAACTTG 426 36 100.0 30 .................................... GATTCTTTAGCCATGGATGTTTTCCTCCTT 360 36 100.0 30 .................................... TGCATTTTTACTTTTTCACGTTGCACTAGG 294 36 100.0 30 .................................... GGTGGCGCTGGAAACTGGATAAACCATTAT 228 36 100.0 30 .................................... TAAAAATCAATCAAAGAACGGCGCAAAAAA 162 36 100.0 30 .................................... AGAACAAGTACCGATCGAAAAGGGTATTGG 96 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGACTGAGATTTCTCTGCGGTGACTGAACAGATCGGAGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACC # Right flank : CACGCGGCCTGCCCCATTGTTTACTACTTCGGTCTCAGGTAGATGTCGAATCAATCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1044-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFNE010000067.1 Lacticaseibacillus paracasei strain INIA P272 isolate INIA P272, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1043 36 100.0 30 .................................... TAAAAATCAATCAAAGAACGGCGCAAAAAA 977 36 100.0 30 .................................... AGAACAAGTACCGATCGAAAAGGGTATTGG 911 36 100.0 30 .................................... ACGCGGCCCGCTATCTGGTTTACAACTTCG 845 36 100.0 30 .................................... CCACTATTTCTAAGCATTGTTCCTAGTTGG 779 36 100.0 30 .................................... CAGAACTGGTAACCGATCTTATCAACAAAG 713 36 97.2 30 .............................A...... TGAAGTCATGGGGCTTTCTGACCCAAACTC 647 36 97.2 30 ...C................................ ACGATGACAACCTTGAACTGTATTACTCAG 581 36 100.0 30 .................................... ACATGAGACGAACCAACGATCAATGCGTGG 515 36 100.0 30 .................................... GTCAGGATGATCTCGTAGTGATGCCGGTGG 449 36 100.0 30 .................................... GAACGAAAGACAGGTGATCAGGATGGCGGT 383 36 100.0 30 .................................... TCACAATTGTTGGCCTATTGCCGAAGTATA 317 36 100.0 30 .................................... CCAAAATATCTGGAATATTGCGTGCCACTT 251 36 100.0 30 .................................... AATCGCATGAGAGCGTCATTGCGGATTGTG 185 36 100.0 30 .................................... GCTGTGTTGTCATACGTGTAACCAGTGCCA 119 36 100.0 30 .................................... AAAATCAACTCAGAAACAGGCACATCATCA 53 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.7 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGAGCAAACGGCGACTTTATTAACGTTGATCACATGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCCTTCAGACGAGCAATATCAGAGTTGGCTGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCACTGGAGGAGGCAGATNACGTTGCACTANGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCGGTGGCGCTGGAAACTGGATAAACCATTA # Right flank : CCTGCTGCCATTAATGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 102429-101238 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFNE010000008.1 Lacticaseibacillus paracasei strain INIA P272 isolate INIA P272, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 102428 34 94.4 30 --.................................. TAAAAATCAATCAAAGAACGGCGCAAAAAA 102364 36 100.0 30 .................................... AGAACAAGTACCGATCGAAAAGGGTATTGG 102298 36 100.0 30 .................................... ACGCGGCCCGCTATCTGGTTTACAACTTCG 102232 36 100.0 30 .................................... CCACTATTTCTAAGCATTGTTCCTAGTTGG 102166 36 100.0 30 .................................... CAGAACTGGTAACCGATCTTATCAACAAAG 102100 36 97.2 30 .............................A...... TGAAGTCATGGGGCTTTCTGACCCAAACTC 102034 36 97.2 30 ...C................................ ACGATGACAACCTTGAACTGTATTACTCAG 101968 36 100.0 30 .................................... ACATGAGACGAACCAACGATCAATGCGTGG 101902 36 100.0 30 .................................... GTCAGGATGATCTCGTAGTGATGCCGGTGG 101836 36 100.0 30 .................................... GAACGAAAGACAGGTGATCAGGATGGCGGT 101770 36 100.0 30 .................................... TCACAATTGTTGGCCTATTGCCGAAGTATA 101704 36 100.0 30 .................................... CCAAAATATCTGGAATATTGCGTGCCACTT 101638 36 100.0 30 .................................... AATCGCATGAGAGCGTCATTGCGGATTGTG 101572 36 100.0 30 .................................... GCTGTGTTGTCATACGTGTAACCAGTGCCA 101506 36 100.0 30 .................................... AAAATCAACTCAGAAACAGGCACATCATCA 101440 36 100.0 30 .................................... CTGCTGCCATTAATGGCGGGTAATATTTGC 101374 36 97.2 0 ...................C................ - Deletion [101339] 101338 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 101273 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 97.2 28 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : | # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATACATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGTATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //