Array 1 250251-251869 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCFC01000002.1 Serratia marcescens strain 2880STDY5682911, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 250251 28 100.0 32 ............................ TGGTGCAAATACAGCGAGTGTTGCGGTAGAGG 250311 28 100.0 32 ............................ GCCGGCATAAATCCACTGGCGCAGGCCGTCGC 250371 28 100.0 33 ............................ GCCAGGGCCTCGACCGCATCATGATCGGCTGGA 250432 28 100.0 32 ............................ GTCCGCATTGATTTTCCCGACGGCGCGGTCAT 250492 28 100.0 32 ............................ ATCACTAGCGCATCCAGATTGTGATAGTCGCC 250552 28 100.0 32 ............................ GAAAGCAAATACTGCTGAGTCGGGCCAGCCAG 250612 28 100.0 32 ............................ ACTTAGTGCTGGGTGGGTATGGTGCAAATGCT 250672 28 100.0 32 ............................ TGGTCACCGCCGGACAAGACGGCACGCCCCGT 250732 28 100.0 32 ............................ TATGACACCGACCGCAGCCGCGGCGTCAGCCA 250792 28 100.0 32 ............................ AACAAAACCTACCCGGCGAGAAAGCTGTACCC 250852 28 100.0 32 ............................ AGGCGCACGACAAGCGGGTTTAAAACGATGCG 250912 28 100.0 32 ............................ AGTGAAACCGATTGAAAAGTTTCACGCGAAAC 250972 28 100.0 32 ............................ GTTAGAATATTTGGTGTGAATAGATTGCATGG 251032 28 100.0 32 ............................ ACAAACTCAACCTTGCGCTGACGGGTGTTGCG 251092 28 100.0 32 ............................ AGCCACAACCCAAAATCGTTATCAAGCGCCAT 251152 28 100.0 33 ............................ CGCTGTAGTTCTGCCCATCAAATTTGACACCCT 251213 28 100.0 32 ............................ TTTTTCGCGGGATCATACAAATGCCAGTAAAT 251273 28 100.0 32 ............................ GGGAACGAAAGCACGCTGCAGGCCGCCGCCGA 251333 28 100.0 32 ............................ AAACTCATCGACAACGTTGGCAATTTCACGAA 251393 28 100.0 32 ............................ GGCACAAGAAGAGGTTTTTTGCCTTCTTTCCG 251453 28 100.0 33 ............................ ATGAGCGCTACAACAACCAGATAAGGATCTAAC 251514 28 100.0 32 ............................ AGCCTGATAATTTGTCCAAATCGCCACTAATC 251574 28 96.4 32 ...............A............ CCGGACAGGCCGGCGCAGATCCACAGTTCGTC 251634 28 100.0 32 ............................ GTTCGCGCAAACGGGAAATCGTGATGCAGCCT 251694 28 92.9 56 .........T...T.............. TAGCTGGCGGGTAGTGATTTCGCCGGTATCGGTGCACATGCGTTGGTAGTAGATGA 251778 28 92.9 33 ..T..A...................... CCGACTGCGGCTACGCCTTGTCGTGACCACTCC 251839 28 96.4 0 ....................A....... | A,A,G [251859,251862,251865] ========== ====== ====== ====== ============================ ======================================================== ================== 27 28 99.2 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAACGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGTCAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTTGGCAATTCAGGTCATCTGTGGGGGCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCTCCCTAAAGTGCAGAAATGTCACCTTACCCCGTTCCTTTTTGCCGAACCCTTTTTTGAGTGTCACTTTTAATTTATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGACTTTATTTTTCTGATTGATGAATATTGACTCGCTTGCAACGGATTTCCCAGAAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTCTCCCCCTCTGAGTTAAAAACAATACTGCACTCGAAACGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGTGTCGAATATGTCACGGATGAAGGAAAACAGTCTCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 260351-262238 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCFC01000002.1 Serratia marcescens strain 2880STDY5682911, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 260351 28 100.0 32 ............................ TGCTGCATCACGAAACGCCGCTGGTGTATTGG 260411 28 100.0 32 ............................ CGCGACGGTCGGCATACCGAACTTGTCCAGGA 260471 28 100.0 32 ............................ TGTTCGGCGGCTCGGCCGGTTTTGCGGTTGGC 260531 28 100.0 32 ............................ TGGCGGGTGAATACGCGCCGCGACTGCGGGGA 260591 28 100.0 32 ............................ AATCAGGGGGCAATAATGGCGACGATTGACCT 260651 28 100.0 32 ............................ ATTACGGCCTGCGTGATAAAGTCAGCCGGAAC 260711 28 100.0 32 ............................ TTTTCATAGTGGTTTCACAGTCCCTTGAATAG 260771 28 100.0 32 ............................ GACCGGAAGTGGGTAAGGTTCGCCTGCGTCAA 260831 28 100.0 32 ............................ AATAATTCAGCAATATCGAGCAGGGGGATTTT 260891 28 100.0 32 ............................ GAAATGCGTGAAAACCGTGGTGAGATTTTCGG 260951 28 100.0 32 ............................ TTACTGGATTATTAATCACCCCGTGGGCGTCC 261011 28 100.0 32 ............................ AATCAATTTTTATCTGAATCAGGACAAACAAT 261071 28 100.0 32 ............................ GGATGAATCGCGGCGTGATATTTCCAGATGAC 261131 28 100.0 32 ............................ TATTCCGAATGCGTTAAAGAGTTGCCCAAATA 261191 28 100.0 32 ............................ TGCAGGACATTGAGAAGGTTCGCGCGGCGAGC 261251 28 100.0 32 ............................ TTCTCATTTTTACCCTGTGCCTGCTGACTGCC 261311 28 96.4 32 ...........C................ GGTAAATCATCCCACTCGCACGTTCGCATATC 261371 28 96.4 32 ...........C................ TCGCCAGTCTTACCGCTGTGCTTGTACCACAG 261431 28 96.4 32 ...........C................ TTATTGAAAAGCCCGCGTTTCGCCGGCGGCTC 261491 28 96.4 32 ...........C................ GTCACCGGCAGGAACGGACGCGGGCGGATCAC 261551 28 96.4 32 ...........C................ AGGACGACCTGAACACGTTTGTGCAGCAAGTC 261611 28 96.4 32 ...........C................ GAGGATTTGGCCGTGTTTGAGCAGACGGTCAA 261671 28 96.4 32 ...........C................ TGTACCGCCGGTGCCGCCAACAGAGGCGACGC 261731 28 96.4 32 ...........C................ TGCGGGCGCAAAACGGCAATCAGATGAACCTG 261791 28 96.4 32 ...........C................ GTTGACCGCCGGTACTTTCACTGCTGGCCTGC 261851 28 96.4 32 ...........C................ ACGGGACTCATGGCTTCAACCAAGGGGGCCAG 261911 28 96.4 32 ...........C................ AGTGGCAAGCAATGCGCGCTAAACTTTCTGCT 261971 28 96.4 32 ...........C................ TAAATGGTGCCAATTCGCAAGTTTGTTACCTT 262031 28 96.4 32 ...........C................ TTGAATAATACGTTTAAGGATTAAAAGATGAA 262091 28 96.4 33 .............C.............. AATTTACGCAGCGGGTTGCCGACTTTGATTTTC 262152 28 96.4 32 ..G......................... CCGCGCTTCGATAGCGGCAAGTGTGGCACCAG 262212 27 82.1 0 T............C......-..T...T | ========== ====== ====== ====== ============================ ================================= ================== 32 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGCTGACGGCATTGGAGGGATTCGGCTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTTGAGCGTATACGCCGCAGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCAAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCTGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCGCTGCTACGGTACCCTGGTTTTAACCCTTTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACTGAGGGATTTGCCTATTGTTCTTTAATAATCAGTTTGTTAGTGATTTTTTTTGTTCA # Right flank : TAGGGGGGATAAAAATTTACCGACAGGTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAATGCCAGCGTCAGCTCCCCTTTTCCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGAGGTGTCGGTCATCGTACGCCGCTTTGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //