Array 1 2078086-2078573 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027005.1 Akkermansia muciniphila strain EB-AMDK-29 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2078086 31 100.0 34 ............................... CTCCCGCACAATGGATTTAATACCCCGGATGCCT 2078151 31 100.0 35 ............................... CTCCGTTTGTGTGTGAGTTTGCTAGGTGCTGTATA 2078217 31 100.0 34 ............................... AGCATAGCCCCGGCCTCCCCAAGGTCATGCGTAT 2078282 31 100.0 33 ............................... ATCATCGCCGGTACTGCCGACCACCCCGGAAAA 2078346 31 100.0 35 ............................... GTTTCGAGCTTGAGAACCTTGTCCAGCTCAACCAG 2078412 31 100.0 34 ............................... CATTGATTACCCTTCTTAACAACATATCAACCAT 2078477 31 100.0 35 ............................... TTATTCGGCTCTCCTTTTATGGAAGCATTGTGACC 2078543 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 8 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAGAAAAGAACGGTTAGCATCAATGGGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGATTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGATCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CGGTAATTTCAGGAAGTGAAGAGTGTAACGCGCCAAGACATCTGATAGAACTACGACAAGTATCTTATATAACTTGTCAAATTGACTGCTCCGTGCAGGGGGTCTGCATCGACTCTGCCTCCCCCTTACAAGCGGCCAGCAGGTCTCCCCAGTCCACTGCCTCGTCGTCCTCCCTGGCCACTCCCTCCCGGAGCATCCTCTCCCTGGCGTCGGCCAGCAGGTGCATCACTCTGGCCCGTTCGCTGGCGGGTTGGTTGGACATGCGGGGGCTGCCGGTAATCACCACGGCAAACCTGGCCGCGTAACTCTCGGCGCTTACCGTGCGGCTGGGCCAGCACCAGGCCGTCCATATACTCCACGGGGAACGTTTACGCCATGGCTCATCAATGCGGCACAATGCTGCCGGAACCCTGGCCAATACCTCCCGTCCAATCGTCCAATCTTCCGGGGCGCGGTCATCCAGGAGACTCCAATCCATCTCCCGATAAAGACGTCTGGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2111647-2111871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027005.1 Akkermansia muciniphila strain EB-AMDK-29 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2111647 31 100.0 34 ............................... GCTTGAGGTTCTGGAAGATTATTTTAACCAGAAA 2111712 31 100.0 34 ............................... CCTCATCAAAGTCGGGAAGGGTGGCGGATTCCAG 2111777 31 100.0 33 ............................... TAGTCTAACAGGTTTTTTAGGTTTTTGTTATCA 2111841 31 93.5 0 .............................GT | ========== ====== ====== ====== =============================== ================================== ================== 4 31 98.4 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : GTTCCTGGCGGCCTTTTTCTTTTCAATCATCTTCTCTCTCATCCCTGATCACAATCCACACGTTGTCGAGCATATCCCTCACCCAGCACGTCGTTTTACTTCCCTCACGAGTTGTCCACATCAACACGACAGCGGTATCATGGAGGTGATAAATTTGCGGGTTCTTTTTCTTCCGGTCTGCTGGGGATATAACGGTAACGGAGCCGTACAAGGGGATGCAATATGTAGGTGTACACATGCGGGGCATCCTATCATGATTTTTTACCTTGTCGTTGCTCTATCACCTACTCTTTGCAGCTCTTGTGCAGCATCCCTGCATAGCCTGTGTACTTATATCAGATACTTGTCATTTACCCTCTTTTCAGCTCCGACTTTTATAAGATAGCTCATGACTGGTCTGATCCTCCTTAACTCCCGTGTCTTCTAGGGTTCCAACGGATTTCAACCCTGATTCAACTTATATCAACTATCCTGTCATTCCTCAAGAGATGACCCATCTT # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCTATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTATTCC # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2694199-2691208 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027005.1 Akkermansia muciniphila strain EB-AMDK-29 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2694198 33 100.0 34 ................................. CCCGGGTAGCATTCATCATGTGGGGGAAGGGGAA 2694131 33 100.0 34 ................................. CACATTATAGCACACTCTGAGTCCTCACCGTAGC 2694064 33 100.0 34 ................................. CGTCAAGAGGCTGCGTAGGTACCGCTCACTTTTA 2693997 33 100.0 34 ................................. CTCGTCTAACCGGAAGCTGACGGAACCACGGCAT 2693930 33 100.0 35 ................................. TTGAACTCTAAGGGGAAAGTGATATGTTCTTCCCA 2693862 33 100.0 35 ................................. TATCTTGAATACGGAGATACAGACGGCCTAACTCC 2693794 33 100.0 34 ................................. CCGTTTTCGCCAATCCAGACGACAAGGTCTTTGA 2693727 33 100.0 34 ................................. GGGATAGCACAACGCGGGGTCAAGTCAATAAAAT 2693660 33 100.0 35 ................................. GGATAGAGCACTGCCGTGATGGATGACTTGATGTG 2693592 33 100.0 35 ................................. CCGTCGTAGTTGATAGACCGGGAAATCAATATAAA 2693524 33 100.0 34 ................................. GCGGCACATTGGAATCAAAGCGCGAACTGTTCCG 2693457 33 100.0 35 ................................. TTGATAAAAAAATTTGCAATCGTTGCAAATTGAGG 2693389 33 100.0 37 ................................. TTGTTGATAAATCCGAGCAGAAAATCCCGGATAAAAC 2693319 33 100.0 34 ................................. CTTTTCCCGGTTTTCATCTTTTCTCCCCCCCCTT 2693252 33 100.0 33 ................................. TGTATCGGCGCACGATATGCGTAGATGAACAAG 2693186 33 100.0 34 ................................. TCCGTCGATAGCGGCTATCACCTGAACGGATGAT 2693119 33 100.0 35 ................................. CGGATGGTCTCTAAGCCATAGCATCCATTGCGTTT 2693051 33 100.0 34 ................................. GTCTACATCGAAGACGAACCCAGGGTGACGGCCA 2692984 33 100.0 36 ................................. GTTTTTTCCTTCTTTCCTTTTTTAGGGGCAACAACT 2692915 33 100.0 34 ................................. GAGGAAGAGAACAGGGCTATTTTGCCCACGGCGG 2692848 33 100.0 34 ................................. ATTTCCTTGAGCATTTCAATGGCATCCTGCAGAA 2692781 33 100.0 35 ................................. CCTCTCTTTTCAGGCGGAAAGGCCACGAACAGCGA 2692713 33 100.0 37 ................................. AACTGTATATGCAATTTAAACAGGTGAAGGGAAAAGA 2692643 33 100.0 35 ................................. TTCCAGCATGCGCTCCCTCATGTTGGCCACAAACT 2692575 33 100.0 34 ................................. TCCTTCGACCTGCGTGGCGACGGACTGGAAGGCA 2692508 33 100.0 34 ................................. GGAAGAGGACGATGGGGATCCATACTGAAATCTG 2692441 33 100.0 33 ................................. GCGTCGCCGGAGGCGTCGCGGTAAGGCATGGAG 2692375 33 100.0 35 ................................. TTTCACTCCGCGCTGAAGAATAGGGATGATGCCCT 2692307 33 100.0 35 ................................. TTGATGGTTTAAATGTTGATTTTGGCGGGGATCCC 2692239 33 100.0 35 ................................. CTTAGGTGTGCATATCAATGTAGATGTGTCTACTT 2692171 33 100.0 35 ................................. TGGTTTGATAGGTAGCCTTAACTTGGAATTCTCAA 2692103 33 100.0 35 ................................. TTCCGTATTCCGGTTTTTTGCCGCCCGGTACCCGG 2692035 33 100.0 35 ................................. CAGAACGGAGAAGACCACCAACGTCTGGCTCACTC 2691967 33 100.0 34 ................................. GTGGTTGATTACAAGTTCGGCCGTCTCCCCGTGG 2691900 33 100.0 33 ................................. CTCATGCCCACCAAAGAAGAGATCAAAGACTGG 2691834 33 100.0 33 ................................. GCGATAAGATGGAAGAAAACCGTTTCCTTTTTT 2691768 33 100.0 34 ................................. GTTTGTTTCGGCCTTGGTATTGTAGAGGGTTGCC 2691701 33 100.0 34 ................................. AATCAGGCTGTTCGTGTTGCAGAACTGCTGTTGG 2691634 33 100.0 34 ................................. ACGGTGGAAAAATCAAAGTTCGGCGGCCCTGTCC 2691567 33 100.0 38 ................................. CTATGTACGAAGCGGGAAATGCTCAAAGGATTGCGGGG 2691496 33 100.0 33 ................................. TGATTGGTACTATGAAGCAGGTTGTTATGCTTG 2691430 33 100.0 34 ................................. TTAATTTACAGAATAAAAGTATCTTGCGAAAGAT 2691363 33 100.0 33 ................................. TTTTAAACTCCGAAGGAGTACACAAACGGGCGG 2691297 33 100.0 24 ................................. TTGATTTGGTCCTCGCCCGGTATG Deletion [2691241] 2691240 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ====================================== ================== 45 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGGCAAGTGGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCTGGTTCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTTTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : AGAAAAAGTTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2703091-2702670 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027005.1 Akkermansia muciniphila strain EB-AMDK-29 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2703090 31 93.5 34 A..A........................... CCGGTTTCCACGCGCACGGTATTGTTGAACTGGG 2703025 31 100.0 34 ............................... CGCAAGAAGGAATCCATCGACGGATTCCAGAACC 2702960 31 100.0 34 ............................... TTCAAGTCAATCTGCTCCCATTTCAGCGTCGCCA 2702895 31 100.0 34 ............................... TTCAAGTCAATCTGCTCCCATTTCAGCGTCGCCA 2702830 31 100.0 34 ............................... TTCAATCATGGTCAGGGCATACGTTAAATCTTCC 2702765 31 100.0 34 ............................... ACCTTACCCAGCGCGGTAAAGACTTGCTGTTTAT 2702700 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== ================================== ================== 7 31 97.7 34 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : ATCATCAGGGCGAGGAAATGACGCCTTTTGTCCGTGCTTTATGTTGCGATGATTAGCCCACTGGGCAGATACAATTCAGGCCGTCAGGTTGTTCCTGGCGGCCTTTTTCTTTTCAATCATCTTTTCTTTCGTTCCTGATCACAATCCACACGTTGTCGAGCACATCCCGCACCCAGCATGTCGTCTTGCTTCTTTCACGAGTTGTCCACATCAACACGACAGCGGTATCATGGAGATGATAAATTTGCGGATTCTTTTTCCTTCGGTCTTCGGGCGAGATAACAGTCATGGAGCCATACAAGGGGATGCAATATGCAGGTGTACACATGCGGGACATCTTACCATGATTATTTTCCACGATGCTTGATAATTTCCTCTTCTGACAACAACATTTTCCACACTGTCTTTCTCTGCTCACTTAACGCTTGCACCCCTTGATTTTTCTAGCGTTCACCCCTATTCACCCTAAATTCACCCCTTTCCACCCTTCATTGATAAAG # Right flank : GTCGTAGATTGAACGACCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2724108-2723351 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027005.1 Akkermansia muciniphila strain EB-AMDK-29 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 2724107 31 100.0 33 ............................... TTGACGCGATTTTTAGCGTTGCGCCCTTCCGCA 2724043 31 100.0 34 ............................... CGCACCGTCAATACTTGCATAATTTTCGTAATTA 2723978 31 100.0 34 ............................... CAGGCGCAGGCCGTAAAGCATGCGCCCCTTATCC 2723913 31 100.0 35 ............................... TGAAACTCCGCGCTCAAACAAATACTTCCGCGGGG 2723847 31 100.0 34 ............................... CTGATATGCGGAAGCATCAGGACAAAATAATCCT 2723782 31 100.0 36 ............................... ATCCACATTTTGTGAAGCTTAAGGATTTCGTTTAAT 2723715 31 100.0 34 ............................... CGTCTGCCCGTGCCCGTCCTGGTATTCGTCCGCG 2723650 31 100.0 39 ............................... CATTTTCCGAACAACCCTATTGTGCCCGCAACATCACCG 2723580 31 100.0 34 ............................... CGGCAGTCGGTCATCAGGGCGGAAATGCGTGTCT 2723515 31 100.0 35 ............................... TCTTTTTTTGTAAGAGTTGTTCGAAAAATAGGCAA 2723449 31 100.0 35 ............................... AATCAATTTACTGTTATCATCCGCAAGAATGCTTC 2723383 31 77.4 0 ..............T..A...C..G..C.TT | C,A [2723357,2723363] ========== ====== ====== ====== =============================== ======================================= ================== 12 31 98.1 35 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCGCCTCTTCTTTTGTGGAAAACAAAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGTTAGGATGTTTCCGCATCGTGCACAGGCTCTGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTACGACCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGGA # Right flank : GTGGAAAAATTATCAAGCAGTGTGGAAAAACGTTCCTGAACGCCACCCCGCTGCATCTTTATTGCAATATCGATGCCTCGCCCCTGCAAACGGCCAACAGGTCACCCCAATCCACCGCTTCGTCGTCCTCCCTAATCACTCTCCCCTCCCGGATCATCCGCTCCCTGGCGTCGGCCAGCAGGTGCATCACTCTGGCCCGCTCGCTGGCCGGCTGGGTATCCAGCCGGGGATTGCCAGTCGTAACGACAGCAAACCGGGAGGCGTAGCGCTCCGGAGAGGCCGTCAGGCTGTACCAGCACCAGGCCGTCCATGAACTCCACGGCGTGCGCTGGCTCCATGGTTCATCAATACGTACCAGCGCGGCGGGCAAACTGGCCAATGCCGCCCGCCCGATGGTCCAGTCCTCCGGAGCTAGGGCATCCATGTTCTCCCAATCCATATCCCGGAGCAATCGCCTGGCGACCCGGCCGCGCAAGGCGTACAAACAGCCGTAAATCATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //