Array 1 338074-333589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHB010000035.1 Shewanella algae strain A56 A56_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 338073 29 100.0 32 ............................. GTGCCGCACCGGCGCAGCAAATATCTGTACCA 338012 29 100.0 32 ............................. TTATGGCAGAGTGGGGCGGGTATCACCGGGCA 337951 29 100.0 32 ............................. CGAACGCCCAAAGTGTACGAGATGGCACATTG 337890 29 100.0 32 ............................. GATTGGCATGGCCGATTCTTGCCACAATCCTC 337829 29 100.0 32 ............................. GATACTGACCCAGAGCCCGACCCAGACCCTGA 337768 29 100.0 32 ............................. CAATAGCGGCCTTACGTGACAGGCCAGCTGCG 337707 29 100.0 32 ............................. GATGAACGGGAACAGGTTTGACGGCCTCCTGA 337646 29 100.0 32 ............................. TCCTTACGGAATGTTAGCTCAATACGAGTTGT 337585 29 100.0 32 ............................. AACGGTAGCCTTAGCACCCGGCCCAAGCTGAG 337524 29 100.0 32 ............................. GACATTGAGATAGTCCCGATAAATCTCATGCC 337463 29 100.0 32 ............................. CGATTCATGAGCTGCTCAAGCAATTGCTCTTG 337402 29 100.0 32 ............................. GAATACTTCGAAATGGTTCAGCGTAGTGACGC 337341 29 100.0 32 ............................. CTCTGATGAAGCCGTCGCCACTGTTGATGCCA 337280 29 100.0 32 ............................. TCTTAACTACCCCCAGTAAATGGTTAGTCAGA 337219 29 100.0 32 ............................. CTCACCTTAGTCTCGGTCTTGACGCTAAAAAG 337158 29 100.0 32 ............................. TTTGATGAAATTAACTCGGGTAAGAAGCACAA 337097 29 96.6 32 ............................T AAATTGTTCGGTAAAGCGTTCAAGGGTTGTTG 337036 29 100.0 32 ............................. GCTTCCAGTTCTGTGCCTGTTATCGAATACTG 336975 29 100.0 32 ............................. TATTCAGGGTTTGGGATATGCTCAAATCCTGT 336914 29 100.0 32 ............................. CTTGCCTAAATCCTTAGTGGATTCTTTTACCT 336853 29 100.0 32 ............................. CTGGAACCACCTTGACGAACCACCACCAAACA 336792 29 100.0 32 ............................. CAGCTTGATTGAATCCAAGCGGGTTACCTCAT 336731 29 100.0 32 ............................. GTGGCAATTGCCGCCTGGATCTCTGCACCATA 336670 29 96.6 32 ............................C AGCAACTGCGCCGCATACACAAGCAAGATGGC 336609 29 100.0 32 ............................. CCATGTGGCAGGCGTTAGAGGCAGAACTTGCC 336548 29 100.0 32 ............................. GTGGAAAAGGAAATCCGCAGTGCCTTTGCGGT 336487 29 100.0 32 ............................. CAATCAGAGCACCACGTTTGGGATCCAAGGGG 336426 29 100.0 32 ............................. GCTGGGAGGTCGTGGCTTGGATTGATGCCGAG 336365 29 100.0 32 ............................. CACACATCACCAGCGCTATTGGAATTAGCCAC 336304 29 100.0 32 ............................. GGACTGCGCGAGTTCAACGAGCTGGCCCGTAA 336243 29 96.6 32 ............................C GAAGCACTAGCGGTTACACAAACTCTGAACTA 336182 29 100.0 32 ............................. CAGACAGCGGCCAAGGCTAAGGAAGCTGAAGA 336121 29 100.0 32 ............................. GCATTGTCACGATAGGCTTTTTGGGCGTAGTC 336060 29 100.0 32 ............................. CTGCAACTCGGTCGAACCGGTGCCAGTGGCAT 335999 29 100.0 32 ............................. CATCTGGGCGTGGGGTGTTGAACCTTCGATCA 335938 29 100.0 32 ............................. CGGTAACCGCCCATTCGCGAATCGAACCGTTA 335877 29 100.0 32 ............................. CGGATGCCCTCGCATATCCTCGGCGCGTTTGA 335816 29 100.0 32 ............................. TAACATCAATTTGTTTTATCTCGGCTGAATAA 335755 29 100.0 32 ............................. CTGATGGATGTGAACATCCGGCGGCTCACTGG 335694 29 100.0 32 ............................. ACATGCCATCGAAACACATAGATGATCAAACG 335633 29 100.0 33 ............................. GTTATTTCGTCGCTAGTCGAAACAGGCGATAGT 335571 29 100.0 32 ............................. TACTCTGAAAGGAAACGAGCATAGTGGTCTAA 335510 29 96.6 32 ............................T TCAATATGGCCATGCCTCGGCTGGCTGAAATG 335449 29 100.0 32 ............................. TTATGGCAGAGTGGGGCGGGTATCACCGGGCA 335388 29 100.0 32 ............................. AAAACAATCCGATGAACAATCCAGCAGCACGC 335327 29 100.0 32 ............................. CGTTAGTGATAGTATCAATATTAGTTCAATCA 335266 29 100.0 32 ............................. TGTTGATGTACGTAGCGGACAGGTCGAATCGG 335205 29 100.0 32 ............................. TCCATGAGCATCTCGTCGCGAGACATTACTGC 335144 29 100.0 32 ............................. TCGAGTGACCTCATCGGGATCCGCCCGGTGCT 335083 29 100.0 32 ............................. CGTTCGAGCAGGCCACGCTGACCGGGGATCCG 335022 29 100.0 32 ............................. TAGGCTTGAACATACAATCCAGTTCCGACTGA 334961 29 100.0 32 ............................. GAAAAATCCAACACTGGGAATTGGGTCTGGCC 334900 29 100.0 33 ............................. CAAAAATCGTTTGCTTGCTATGATTCGACTCGC 334838 29 100.0 32 ............................. TGCTCTAGAAACAAATTGATATTGGTAACTAT 334777 29 100.0 32 ............................. CTGGAATTCGAGGAAATCAAAAGAGCACTGCC 334716 29 100.0 32 ............................. TTGGAGCGGTATTATTACCCGCTTCCAAATTC 334655 29 100.0 32 ............................. CCATTTCAGCCCCTTGGGTCGCCAGAGTCCAC 334594 29 100.0 33 ............................. TTCGATGTGAGGCCAGTAATTAGCCCCTCCTGC 334532 29 100.0 32 ............................. TTGGGTTTCCCTGCGGGGCTGGTCTGGCAGAG 334471 29 100.0 32 ............................. GAACATCTATCTCCGACTTGGTGTCTTGCCTT 334410 29 100.0 32 ............................. CAATGCCTTTGATTTAGTCTGGCAACCCAAGG 334349 29 100.0 32 ............................. GCCGCAAACGCACTCACCATGTGGGGCGCCAA 334288 29 100.0 32 ............................. CCCCTTTAAAGCCCCTTCTTCAGTCATTCCTG 334227 29 100.0 32 ............................. CCCTCGCTTACTGCGAAAATTCCGAGATTCTC 334166 29 100.0 32 ............................. AATCATCCATATGAGAAGCTGCGTGTGTTGCC 334105 29 100.0 32 ............................. TACAAGTATGTTGACGTTATCATTAACCAAGG 334044 29 100.0 32 ............................. GCAATGGACAACTCCACATATCTTGCAACAGA 333983 29 100.0 32 ............................. CCACGCGATGCAGTGACACTTTTTAACCCAGT 333922 29 100.0 32 ............................. CTATGGCAGCCAACTCCGAACTGGAAGAGCTG 333861 29 100.0 32 ............................. GCCGCTGTCAGGCTTTCAAACCAGATAATTCA 333800 29 100.0 32 ............................. GCACCGCCGTAAGGGCCGCCGATTATCAAATC 333739 29 100.0 32 ............................. CAGATGCCGACCGGCAGATCGCTTGTCTTGTC 333678 29 96.6 32 .T........................... CTCGAAGAAGTAGCCGCAACGGTTGAGGCTAT 333617 29 89.7 0 ............T.............GT. | ========== ====== ====== ====== ============================= ================================= ================== 74 29 99.6 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCTTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGAGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAATCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : TATTTCTTTACTGTATAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATGTCCACTCGCAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCATGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAACTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGTGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //