Array 1 839601-838595 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031321.1 Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 839600 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 839539 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 839478 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 839417 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 839356 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 839295 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 839234 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 839173 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 839111 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 839050 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 838989 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 838928 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 838867 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 838806 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 838745 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 838684 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 838623 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 866017-865316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031321.1 Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 866016 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 865954 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 865893 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 865832 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 865771 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 865710 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 865649 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 865588 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 865527 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 865466 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 865405 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 865344 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTTTTTTAGAATAACAGTATGTTTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //