Array 1 258595-259618 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAFLVT010000001.1 Enterococcus sp. MJM12 scaffold2.1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    258595	    36	 100.0	    30	....................................	TATCTACATGTTTCATCAGTTTTACCGACT	
    258661	    36	 100.0	    30	....................................	ATCACTTTGCAACTTTTTTCCTTCACCTGA	
    258727	    36	 100.0	    30	....................................	AATAGAATTACCTTGAACATCTTGTCCCTC	
    258793	    36	 100.0	    30	....................................	GTTCTTTAGTTGCTTTAGCTTCCTCAACAA	
    258859	    36	 100.0	    29	....................................	TAACCTGTTTGATTTCATCTACTGTTACT 	
    258924	    36	 100.0	    30	....................................	CTGTAGCGCCAGTATTAGGATCATGAATAT	
    258990	    36	 100.0	    30	....................................	CTTTAATCGTCATATTCAGTCACCTCAAAA	
    259056	    36	 100.0	    30	....................................	TCCTCCACATTTCCACCAAACGAATTAACT	
    259122	    36	 100.0	    29	....................................	TGGCTAAAAAAGTTGAAGAAACAATTGAA 	
    259187	    36	 100.0	    30	....................................	TTTTTGGTAGTTTTAACTACAAAAATGAGT	
    259253	    36	 100.0	    30	....................................	ATGGAAAACCTCTTTTCAAGGATTGGGATG	
    259319	    36	 100.0	    30	....................................	TTTAACGAAGAAATCACAAGTTATTCATTG	
    259385	    36	 100.0	    30	....................................	TACCCTGGTCAATCAGTCAGATATTTAGGC	
    259451	    36	 100.0	    30	....................................	AGGTACTACAGCAGAAACCGTCCTTTCTTA	
    259517	    36	 100.0	    30	....................................	AATCCTTCGGTAAAACCTGACTATTGCCAT	
    259583	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	 100.0	    30	GTTTTAGAGCTATGTTGTTTTGAATGTCTCCAAAAC	                              	       

# Left flank :   GTGAAATCAATGATTGATAAATTGACAGCTACAATCAGTGAATTGATTGGTTATGAATTGTTAGAGCATGAACTAGATTTAGAAGAAGATGAAATTACAGTTAACGAACTTTTTAAGGCGTTAGGTGTAAAAATTGAAACAAGAAGTGATACAATTTTTGAAAAGATGATAGAGATTATTCAAGTATACAAGTATCTTTCCAAGAAGAAATTATTAATCTTTTTGAATACATGTTCATATTTAACACATGATGAAGTTGATGAATTACAAGAGTATATTTCATTGAATAATGTGGACGTTTTTTTCGTTGAACCAAGAAAAATAGAAGATGTTAGACAATTTATTTTGGATGAAGATTTTTTCTTAACAGAAAAAGATGTGTAGTAATTCTTTGTTCTTTGAAAATTAAATATATAAAATTTCAACAAAACGGAGATATTCTTTATTGAAGTCTTGCTATGGACTAGTAGCGCGATTACGAAACCCCAAAAATCTACGAG
# Right flank :  CAAATTAATTTTTATTGATGCTTTAACTATCGTTTTAGAGCTATGTTGCAAGAACAGGCTTCTAGTGTGTTTTAGAGCTATGTTGTTTTCAGTTAGTTGTATTTTCTATTTCCCGATGTAATCTCTTTCATTAACTGATAAAATTGAGATAAGAGAAAGTAGAAAGAGGTTTACTATGACACAATTTAAAATTGCATTTTTTGATATTGATGGAACACTAGCTGACAATGAATTGCCCCATGAGATGGGAATTTTGCAAAGAATTCCAGCATCAGCTAAAGAAGCATTACGGCAACTAAAGCAAAATGGGATTGAGCCTGTCATTGCGTCAGGTCGAAATCATTTGATGCTGCGGGAATTTGCAGCAGAGTTGGGGGTAGAAAGTTTAGTTGCTTCTAATGGTACACAGGTTTTGTATAAAGGAGCAGAGCTAGCGCTTCATCCAATTGATCAGCAGACATTGAAAGCGACGATGGCGGAATTTGATCGGCAGAAAATTC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTGTTTTGAATGTCTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-0.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.27   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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