Array 1 6418-2865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGU010000040.1 Clostridium perfringens strain C10 NODE_40_length_25766_cov_92.3724, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6417 29 100.0 36 ............................. TCAGCAAAAGCTCTAAACTCTAAAACTTTTAAATTA 6352 29 100.0 36 ............................. TATCAAGTAAGTAAAGGTGAAGAATTTATTGTCTCT 6287 29 100.0 36 ............................. TGAACTTCTTTATTTCAGCTAACTTTTCTTTATACT 6222 29 100.0 36 ............................. TAGTAACGCTTCGCTCTATCTGCGATGCCACTTTAA 6157 29 100.0 36 ............................. GTTTTTATCCCACTTGAAAATGGTTCAGTGCTAAAC 6092 29 100.0 36 ............................. TCTATTTTATCTATCCACACCTTTAAGCCTCTAACC 6027 29 100.0 36 ............................. GCTTTCTTTATTGATAAATAACCACATAAAAAGTAT 5962 29 100.0 36 ............................. GCATTAGTTGGTGTTACATTATTTGAATTGTTCTTT 5897 29 100.0 37 ............................. GTACTTATGGCTTTAGGAGCATTTGTTACAGGAGTAG 5831 29 100.0 36 ............................. TTCTTTAAAAAAAAATAACAGCTATGCTACGGCTAT 5766 29 100.0 36 ............................. CCATTTAGTTCATTTATTTTCGCAACAAAATTTTTT 5701 29 100.0 35 ............................. CCAGGAGAAAGTCAATTAATAATAAGGTCTGATGA 5637 29 100.0 36 ............................. TATGCTGATCCCCATGGATTTCCTTCTGCCTTATCT 5572 29 100.0 36 ............................. TGTAATACATGATATCCAGGAACTACTCCACAATTC 5507 29 100.0 37 ............................. TTCTCGAACTCTCTATTCCTCCCCAAGCACCTCTCAT 5441 29 100.0 36 ............................. TACCAACAGCCTCAACATTCTTAGGACTAATTAACA 5376 29 100.0 36 ............................. GGAAGTCCGAAGAATCCAAAAATACCGTACAAATGT 5311 29 100.0 37 ............................. AATTAGATAATATGTGCATATGCCACGCACCTCTTTT 5245 29 100.0 36 ............................. TACTTTATCCTCAAAGTATTCCTGGTACTTATCACA 5180 29 100.0 36 ............................. TAGTTTGGTTAGGAATACTAAAGATGGTGTAAGTGG 5115 29 100.0 36 ............................. ATTTCATAGGCTTGGTAACGCTTTAATATATCTGCT 5050 29 100.0 36 ............................. ATTCCAGGAATAGAACCACTCTCACTATATTGCCAC 4985 29 100.0 37 ............................. AGGAAAAACTGATGCAATAGAAAATTATCAATTTATT 4919 29 100.0 36 ............................. TAAGCATTATTTACTGTTTTAAAATTACCAGTAAAA 4854 29 100.0 37 ............................. AACTTGATAATAATGGCGTTGAAAAAGGTGTTGGCGA 4788 29 100.0 36 ............................. TTGTCATTTAAAACACCATCCTTGACACTATTATAA 4723 29 100.0 36 ............................. TTGAACCACTAACATCTGGAATACTAGGATTAAAAA 4658 29 100.0 36 ............................. ATTTATAAAACTCTTGTATAACACCACCATTGAAAG 4593 29 100.0 36 ............................. GTTGATAAACCAGTTGAAAATATATGGGATAAAATA 4528 29 100.0 36 ............................. ATTAAAATACTTATTACTTCTGCATTTTTAACATAG 4463 29 100.0 36 ............................. AGATAACTGAATCCCACTCCACATAACAACACTACC 4398 29 100.0 37 ............................. TTATTTAAGCAATTTGAAGAAGTTTTAAATAAGAATT 4332 29 100.0 36 ............................. AGATAATTTCGATGTTTATGTAAATGAACGTATTGG 4267 29 100.0 36 ............................. TGAAAATATTTAATAATGTTTTTTCTTTTTCATTTA 4202 29 100.0 36 ............................. TTTTCCATTACCTTTACGATTTTGAGTTAAAAGAGT 4137 29 100.0 36 ............................. TGGTCGTTACCTTTGACCTTAGGTTTTTTATTAGTC 4072 29 100.0 36 ............................. ATATGGGAAAATTTCTATATTCATGATGATGCAGGT 4007 29 100.0 37 ............................. GTTGTATAAATGGGTATGATGCGAAGCATATGTATTA 3941 29 100.0 36 ............................. GAAGTATCAGTTTGAACACTACTAAATAAAGAATAA 3876 29 100.0 37 ............................. TTAAAAGCAGAATCCATAGCAGAACTTACATTTGAAA 3810 29 100.0 37 ............................. CAAGGTACTGATTTTTATTCTTTTTGGGGAGATAGAG 3744 29 100.0 36 ............................. AAGAATAGTTATTTTTATTTTCGTTTTCATGATAAG 3679 29 100.0 36 ............................. ACTGCACATGACTTTTTAGATAAAGAGCTTGAGCAA 3614 29 100.0 37 ............................. GGGAAAGTTTTATAGAATGGAAGGATAATTTAATAGC 3548 29 100.0 36 ............................. AAGAAGATTTTAAAACAGAATTATGTTGTTAAAGGA 3483 29 100.0 36 ............................. ACAAAATATTCTGATGAATAAGACATATCTCCTTGA 3418 29 100.0 36 ............................. GAAAGATTACCAGTCAGTAGGAGCTATCATTTGTGG 3353 29 100.0 36 ............................. ATAGTAAACAGCCATTTCAGCACTCTATCATACTTA 3288 29 100.0 37 ............................. GTTAAACCTTTCTCGCCTTTAGCTCCAGGTTCGCCTT 3222 29 100.0 36 ............................. TGGGTTAGAAGGTTTAGATCAGGCTAGTAAAGAAGC 3157 29 100.0 36 ............................. ATACAAGAATCTGAACTTAAAGTAAGAACAGGAAGG 3092 29 100.0 38 ............................. TTCATCTTTGCAGTTTGAGTTTTAATCTTATCTTGTTC 3025 29 100.0 36 ............................. TATTACATGAGATGGTACATTTATATCATAATGTTA 2960 29 100.0 37 ............................. TTGCTTTTTAAGACACACTCTAAATATGTGCCTTCAT 2894 29 86.2 0 .................GAA....C.... | T [2867] ========== ====== ====== ====== ============================= ====================================== ================== 55 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : ATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATAAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCTTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 55454-53902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGU010000005.1 Clostridium perfringens strain C10 NODE_5_length_117020_cov_99.9046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 55453 36 83.3 30 T.A.C.TA..A......................... ATGAAATTATATTTTGTCTATAACATATCA A [55441] 55386 36 100.0 29 .................................... TAATAGATTCAGATGATAATGACTACGCT 55321 36 100.0 30 .................................... CTTCTTTTATTAGCTTATTTTTATTTAAAA 55255 36 97.2 30 ......................A............. ACAAATACTAGCCTTATGAATGGACAAATT 55189 36 100.0 30 .................................... AAGAAACATTGCATATTATTAAAAGCAATA 55123 36 100.0 30 .................................... GATATGTTAAAAGCATATGGGCCAAAAATA 55057 36 100.0 30 .................................... ATTATACCAGGGTTTGAAACTTCTGCTGCT 54991 36 100.0 30 .................................... CATAGTAGTCGTTAAAATAATAAGAGCTAT 54925 36 100.0 30 .................................... TGTATTTGTGGTTATATGCAGTGCAGAATT 54859 36 100.0 30 .................................... GGTAACATTACAAGTATCTGTATTGGTGAA 54793 36 100.0 30 .................................... ATCTATGACTATAACTGGAGTGATGTTGGA 54727 36 100.0 30 .................................... TATAAATCTAACTTAAATGATGAGGGGATA 54661 36 100.0 30 .................................... TTAGGATTATTAAAGTTTGTTGGGAAAGAA 54595 36 100.0 30 .................................... TATGTAACCATTCTATGTTTCTAGATAATA 54529 36 100.0 29 .................................... TATACGCTAAATTAAAGGCTAATGAACCA 54464 36 100.0 30 .................................... TAGAGCAATGGGGATAAGTATAATTGCAGG 54398 36 100.0 30 .................................... ACAGATGATATTATAGATTTAATGATGACA 54332 36 100.0 29 .................................... CTATGTATGATGAATATATTAACTGGTGT 54267 36 100.0 30 .................................... TTGTCTGCAACAGAAGAAGATACAAGAATG 54201 36 100.0 30 .................................... GTACTTTATAAATGTACATTTGCTATAGAA 54135 36 100.0 30 .................................... CTGTACTCTATCCAATCATCAGCCATTAAG 54069 36 100.0 30 .................................... TGATGTAGTTACAAATGTTAATGTTGAACT 54003 36 100.0 30 .................................... TGCCGACTTAATGATTGGTATGGGAATGAC 53937 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.2 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : GTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAAA # Right flank : AGGAAGTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAAAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-96.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //