Array 1 23780-22777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINVH010000002.1 Streptomyces sp. HPF1205 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 23779 28 100.0 33 ............................ CCGGCAGCAACAGTTCGACGACCGGGAGGCGTA 23718 28 100.0 33 ............................ CGCGCCCGCGGTGCCACCGGCCGCGGCCGCCGA 23657 28 100.0 33 ............................ CAACGGCGGAACCCCGCCCCGCCGCCGCCGCGG 23596 28 100.0 34 ............................ CCACTGGGCGCCCCGGCCGGACAAGAGCATCATG 23534 28 100.0 30 ............................ CGCGGCGTACGCGGTGTCGACCACGAGCAG 23476 28 100.0 33 ............................ CTGCTCGGCCGGCCGGGTCGATGCTGGCGAGGA 23415 28 100.0 33 ............................ CAACAGCTGCCGTGCGTTCCGCCAGTTCCTGCT 23354 28 100.0 33 ............................ CCGCAACATCATCACGGCCGCGTACGGCGAGGT 23293 28 100.0 33 ............................ CCAGCTGTGCGAACTGGTTCAGGCCGTGACCGG 23232 28 100.0 33 ............................ CAGCAAGCTGCAGACGGCGGGCTTCGGCCGGCT 23171 28 100.0 33 ............................ CGACGGGTGGCCCTGGCCTCCCATGAGAGGAAA 23110 28 100.0 32 ............................ CGGGTTCCGGAACCGTTGCGGAACGGTGTCCG 23050 28 100.0 33 ............................ CCGGGCGACCGGGAAGAGTTGACCACCCGCCAC 22989 28 100.0 33 ............................ CATCCCCCACCGCCGCTACCCCTGCGCCGAATG 22928 28 100.0 35 ............................ CTACGTTCTCGACGAGAAGATCGACGCCGAGCACG 22865 28 100.0 33 ............................ CGGCTGGCAGGTCCGCGTCGAGGGGCTGACCGA 22804 28 92.9 0 .......T................C... | ========== ====== ====== ====== ============================ =================================== ================== 17 28 99.6 33 CTGCTCCCCGCACGCGCGGGGCTGTTCC # Left flank : GCGGCGATGGTGGCCGCCATCAACGATGCCGCGCGCTTACGGGGCCGATCCTTCGAACGCATCATGCTCCTGGCCGGCGACGAGGTCGTGGAGGCCGCCCACTCCCTGAACGCTGTCGCGATGGAGATCGACTGGCAGGCCCTGGGCAAGACCCCGGGCACGCTGGAGGAGTGGCGGGCCCGCCACCGCGGGGCTTTCGCCGCCATCAACGCCTTCCACGAGGCAGCGCGTGCGGACCTCGGCGTGAGCGGCCGCGTCACCGGCGACACCCACCCGGACCGCGACCTGCTGCTCCCGCCAGCTCGACGGGAGGAGGGGGCGTGAGGACGGGGGAGGTCGGCCTTGAGCGGCTGGTACTGCGCTGTCGAAGAAACACTAAAGAGGAGTACGGAACTGATGGCACTTGTTGCATTGGTTGCAGTGTTTTAGGGGTAATGCCGGAATCTCAGCTTGTAAGTAAAAACAGCCGACTGCCAGTATGAAACCCCAGGTCGCGGCCT # Right flank : CGCGAAGGACACCGCGGGCCTGGCCACAACCAGCTGCTCCTGCCCGTGGGGCTGTTTCCCGACGTCCGCCTTCTAGGGGCGGATGTCGTCCGCTCGAACGTTGCAAGGTAGCCGTGGTCAACCTTTGGTCAGCCCGGCTCGGCCACGGGCTCGCCACCCAGCTTTTCCGCTGATCAGACCGCGTGCGCCTCCGCCGCGCGAGTCGGCCTTGAAAACCGTCGTGGCAGCGATGTCACCGTGGGTTCAAATCCCACAGCCTCCGCGCAGGTCAGCGTTCTAGCTGGTCAGATGGGGTGGCCCAGGTTCTGGGGCACCCCATCGGCGTGTGGCCTGTCTCACTCCCGGGCGCCCGGATCCCAGTGTTGACCAGTGTTTGTGGACCAGTGGTGGACCGGGCTTGGGGTCCCTCAAGGCTGCCCGGTGGCCCGACGGGTCGAGCGTGTGGTCGGTGGCAGGCGCATCAGGGCCGTTCGGCTGCGGGTCGGGGAATGTCGTCCGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGCTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCACACGCGGGGCTGTTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 44306-43808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINVH010000002.1 Streptomyces sp. HPF1205 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44305 29 100.0 32 ............................. GCGTCCTTGACGGTCACCAGGGAGGCGACGTT 44244 29 100.0 32 ............................. CCGTCGTCCGCGGTGTACTCCACCCTGCCGAC 44183 29 100.0 32 ............................. TCGGCGAGCGTCCCATCCCGCAGCTTGGTGTC 44122 29 69.0 12 ................TACCC.GCGC... GTAGGTCTGGTA Deletion [44082] 44081 29 100.0 32 ............................. CGCGGGATCGCGTAGACGCCGGTCGGCCGGAC 44020 29 100.0 32 ............................. CCGTTGACCGTGACCGACGCGGCCGCGCAGGC 43959 29 96.6 32 ..............T.............. ACCAAGCCCGGCGTTCGGCCCGCGGCCACGAT 43898 29 93.1 32 ...........A..T.............. CGGCGCGGAGCCAGGCCTTGTAAAGTTGATCG 43837 29 75.9 0 .......G...A..A.TT...G....G.. | T [43817] ========== ====== ====== ====== ============================= ================================ ================== 9 29 92.7 30 CTGCTCCCCGCGCCCGCGGGGCTGTTCCC # Left flank : GTGCTGCCTGAGCGGCAGCCAGTCCTCGGTGTCCCGGTCGTGCTTCCCCCAAGTCCGCCGCGCCGCCTTGGACAGCGCGCCGAAGGCACCCGCGGATGCGGGTAAATCACGGTGCATGGCGACATTGGACAGCATGGCGGCATGCCCACGGATGAGAATTCGAAGAAAGGTACGGAGTTGCACGCTTTTGATCGAAACTGACAATGGGCGACCGATCGGGGGTCTTCCAGATGATCCGACAGGCGGCGCCGCGCTCGACGCGGGGCCGTGAGGAAGTGGATGGGACCCTGGCGCTGCGGTTCGAGGGGCGATGCTTAGGTTTGCGTGCCGGAGGCGGAGGCCGATGAGGGACGTCGGTGACTTGGATCGTTCCGATCTTGAGGTGGTGAGCGGGTGACATGTGCGGGTGCGTTGACTTGAGGCTTTTATGTGACTTGCCGGAATTTGGCAAAGTAAGTAAAAACCGCAAGCGCCGCCGGTAACGTGCCTGGTGGCGGCCT # Right flank : GTGGTGAGGGTCGGGATATGTTGCCGGAATGACTGACATGGACCCGTTGGTGCCCGTTCTTGCCGGGCTGGTCGTCGATGTCGTCTGCTTCCTCGACAGTTGCGAGGACGACGAGGTCGACCCCGATTCCGCGGTGAAGATGATGGAGAGCGTGAGCTGGGTTTTGGGGCAGTTGCCGCAGGACCAATGCGCCCGGTTGCTCAAGGTCATCGCGGATCTGGCCGAGTCCGAGCAGGACCCGGGCCGACGGGCGTTCTTGGAGGCTTTCCCTATCGCTTTCGGCCTGGTCGAGGAGCCCGAGGACTCAGCCTGAGCCACATCCTGATCACGCGGAGGTACTCAGCTGCAGGCTGTGGTCGATCGGCTTTGCTCGATCGTGGTCGCTCTGGTGGTCCAGAATCGGACAGCAGCACTCTTCGGTAAAGCGTCCCGACCGCCGCCACGGTGCCAGGCGAGGTAGACGTCGGAAGCCCCGGTCACCAGGGGGAGGCGGGGCGGCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCCGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 54407-55010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINVH010000002.1 Streptomyces sp. HPF1205 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 54407 29 100.0 32 ............................. CCGGTTGAGAGGACATGCGCATGTACGACATC 54468 29 100.0 32 ............................. GTGACGACCGACCACCACCCGCCCTACCCTGC 54529 29 100.0 32 ............................. GGAGCTCCGCCGGTACCTGGTGCGGCGCGCCG 54590 29 100.0 32 ............................. CGGGAGACGATCCGCCGGACGGCGTCCGGGTG 54651 29 96.6 32 ................C............ GGCCGAACAGTTCGACGGCGCGTGCGCTGACG 54712 29 96.6 32 ................C............ CAGGCCATGCTGATGACCGACCTGGTCCTCCA 54773 29 86.2 32 .C.......A..T...C............ GTGTCCAGGGCGAACGCGCCGTTTTCGTCGTT 54834 29 93.1 118 ................C....G....... GTGCCCGCAGTCATGATGAACGCGAACGGCGCCTGCTCCCCTGGCCAGCAGGCAAAGTTCCGTGCAAGAGTCTCTCCCGACCCAGGAATTCCGGTCAGCCCGTGCCGACAGCCGACGT 54981 29 75.9 0 ..C.C..G......T..AA.........T | A [54994] ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 9 29 94.3 43 CTGCTCCCCGCGCACGTGGGGCTGTTCCC # Left flank : GGCGTCTTCCTCGGCTCCCCCAACGCCCGCATCCGCGACATCCTGTGGGCCGAGGTGCGCACCTACGCCCATCAGGGCCGCGCCCTTCTCGCCTACCAGACCGACAACGAGCAGGGCTACACCTTCGAAACCCACGACCACGCCTGGCACCCCATCGACCACGAGGGCCTGACCCTCATCCACCGCCCCGCCGCGCAGCGTCCCGGCGGGTCGCCCGGTGGAAAACCCGGTGGCGCGGGACCGGGCGCGCCGTCCGCGTCGGAGGGCGGCACCCCGCGCCCCGGCTGGAGCAAGGCGGGCAAGCGCCGAAGGTACGGTGGGCGATAGGTGCCGGCGGCCGGGCGCGGCGGTGGCGACGACTGGGAGTGCTCGATACGGCGGAGGGTTCGCTTGTGGGTGACGAGCAGGGACCGATTGTGCGGCTTTTGAGCGATATGCCGGAACCTTTGAAGCTGAGTAAAATCGAGCGCTCGCCGGTTTAAGTCCGCAGGTCACGCCCT # Right flank : TGAAGACGTAGGCCTGCTCGATCTCAGAGCCAGCGCCGGTATAGCCGACCTGCGGTGGACTATCGCCCCCAGCAGGCCGGCGCGCAGAACTGTTAGCCACGCCGAGGGCCTCCATGGGGCACAGGCGGTGGGCATAGACACCAACCGACACTGACATGACCGTGCGGAGGTGGGCCCTCGGGTAGATGCCACCTCCGCACGGTCTTCCACTCAGATACGCGACCAGCAGCTGAAAAGCACTGGCTCCAGCCGACGCCGTAGACCTTCCTGCTCAAGTACCTGGAAGGCATCGAGGCAGGCGCACGCCCATCGGGCCTCTTCTTCTGTCAACCCTGCCAGTTCCATCGCGACCAAAAGATCATCTTCGGTGGTCCAGCCAGAGCCGAACTCCTCGGCGACAGCCCGATAGGCGGCCGCGATGAGAGGATCCGCAGCGAGGCCCGCAGCGTCCACTAGGTTCGCTCCGCATGCCCTCTTTTGAAGCTCGTCGCTGAGAGCTT # Questionable array : NO Score: 4.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.99, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGTGGGGCTGTTCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGCTGTTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 86055-81759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINVH010000016.1 Streptomyces sp. HPF1205 16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 86054 29 100.0 32 ............................. TACAGCAGCCCGGCCGCCGAGCGCAGCAGCGA 85993 29 100.0 32 ............................. CCGCACGGGGGGTCTGATGCCCGCCGTGCTGA 85932 29 100.0 32 ............................. ACCGCGGAGACGCCGGCGGTGACGCCGGGCAC 85871 29 100.0 32 ............................. CTGGAGCAGCGCATGACGCCGCGACCACGCCG 85810 29 100.0 32 ............................. GCCAAGAGGATCCCCGCGAACCCGTTCCGCGA 85749 29 100.0 32 ............................. TGGGCCGCCGCGTGCCGGAAGGCGGGCATGAC 85688 29 100.0 32 ............................. CTCCTTCACGGGCGGCTGGCTTGGGGTGGCTG 85627 29 100.0 32 ............................. CCGCGATGTGGTCGGCGACCGGCGACGACGCG 85566 29 100.0 32 ............................. CCGGCGGAACAGGCGTCCAGCAAGACGCCACG 85505 29 100.0 32 ............................. TCCCACATGTCGGGGCTCAGGGTCTCCTGCGC 85444 29 100.0 32 ............................. ACCAAGCCCATATGGCGAGGCGCCACCTTCTC 85383 29 100.0 32 ............................. TAGCGGTGGTTCTCCAGCCGGCCGACGATTTC 85322 29 100.0 32 ............................. GCGTCCGCTGCCGGCGCGGCCGCGGCGAAGGC 85261 29 100.0 32 ............................. CCGCGATGTGGTCGGCGACCGGCGACGACGCG 85200 29 100.0 32 ............................. CCGGCGGAACAGGCGTCCAGCAAGACGCCACG 85139 29 100.0 32 ............................. TCCCACATGTCGGGGCTCAGGGTCTCCTGCGC 85078 29 100.0 32 ............................. ACCAAGCCCATATGGCGAGGCGCCACCTTCTC 85017 29 100.0 32 ............................. TAGCGGTGGTTCTCCAGCCGGCCGACGATTTC 84956 29 100.0 32 ............................. GCGTCCGCTGCCGGCGCGGCCGCGGCGAAGGC 84895 29 100.0 32 ............................. CACTCCTCACGCCAGACCCCCTCGGCTTGTAC 84834 29 100.0 32 ............................. ACCAGGTTCACGCCCTCGGTCGTGCCGGTGGC 84773 29 100.0 32 ............................. AACGCGGTGATGTCGTCCTCACCGATCCAGGA 84712 29 100.0 32 ............................. TTCCCCACCCGGCCCGCGTTCATGGCTGGACT 84651 29 100.0 32 ............................. GTCTTCGGCGAGAGCCAGTGCGCGGCCGGCCG 84590 29 100.0 32 ............................. TTCCTTCCTCCTCCTCCGGGGGGTGTGGGGGG 84529 29 100.0 32 ............................. CTGTCCGGTCTCCAGAAGGCGTGGAGTGACGA 84468 29 100.0 32 ............................. CGTTGAGCTCGGCATCCGCGAGGTCCGCGCGG 84407 29 100.0 32 ............................. TCCTGGCGTACGGCACCGAGGAGGAGATCAGC 84346 29 100.0 32 ............................. GACAAGGAATTCACCTCCGGCCGGGACCGCAG 84285 29 100.0 32 ............................. CCCGTCTACCGGGCCGTCATCGACTGCCAGTA 84224 29 100.0 32 ............................. ACGCTGGTGACCTCCTTGCGGACGCTCATGAC 84163 29 100.0 32 ............................. CTTTACAACGACACGCACAACGCCCTCGCGTT 84102 29 100.0 32 ............................. AACGCCCTCTGCTCCTCGCTGGGCGGGAACTG 84041 29 100.0 32 ............................. TCGTCGGCACGCGGAATGCACCCACCCGCAAG 83980 29 100.0 32 ............................. GACTTCACCGACCGCAAGGAAGCCGCCGAGGC 83919 29 100.0 32 ............................. AAGTTCTCGCCGAGTGGCTCGGCTTCTCCCGC 83858 29 100.0 32 ............................. GCCCCGTCACCCAGAACCACCACACCGAGACC 83797 29 100.0 32 ............................. CGGCCCGTGAAGGCGGCCCACCCCTCGGGTGT 83736 29 100.0 32 ............................. GTGTCCGGAGCCGGTCTCGACGCTGACCCGGA 83675 29 100.0 32 ............................. CAAACCCGCGTAGTGGAAGTCCAGGACATCCG 83614 29 100.0 32 ............................. CACAGCGCGTCCTGTTCGCTCTCGGCTACGGC 83553 29 100.0 32 ............................. ACGGTCGAACTCCGTTGACGTGGCCAGGAAGC 83492 29 100.0 32 ............................. CCGCTGCTCACCGGCAGGGTGGTCTTGGACCA 83431 29 100.0 32 ............................. GCGATGGTGACAACCTGCTTCGCCGTGGTGCG 83370 29 100.0 32 ............................. CTGGAAGGGGCGTACGCCCGGCAGATCGTCCG 83309 29 100.0 32 ............................. ATGCGGTGTGGTTGGGCGTTCGTGTAGCGGGC 83248 29 100.0 32 ............................. TGGCCGGACGCGCCGTGGACGCGGTCCCCGAA 83187 29 100.0 32 ............................. TTCGAGTTCCTGATTCTGTGCCGTCGCACGGG 83126 29 100.0 32 ............................. GTCTCCCGTCCCTCGCGCACGCCCTCGATCTC 83065 29 100.0 32 ............................. GTGCTGGAACGCTGGGACTACCTGTCGCTGCC 83004 29 100.0 32 ............................. ATGGAGATCCACCGCATCACCGGGATCGCCCG 82943 29 100.0 32 ............................. GAGAAGAACCGTTCCTGGACCTGTTCCAGGCC 82882 29 100.0 32 ............................. CCCATCGCGGGCGGCGAGGCGGCCCTGAAGTC 82821 29 100.0 32 ............................. CTGGCGCTGGAGGACCTGGTCGCGCACATGCA 82760 29 100.0 32 ............................. TGGGTGTGCATGGGGACGTCGCACGGGCCCCC 82699 29 100.0 32 ............................. GTCCAGCCGGTGACGACTTCGGCCGCCGGCCG 82638 29 100.0 32 ............................. CAGCTCCAGCGCCTCGCGTACAACATGGTCAC 82577 29 100.0 32 ............................. GACAACCGCGGCTTGCCGTCGGGGCCGTCCTC 82516 29 100.0 32 ............................. TGCTCGGGTGATGGCTCCGCCCGCCAGGACGT 82455 29 100.0 32 ............................. GCTGGCATCGCGCTCTTCGGTGGCCTGTGGAC 82394 29 100.0 32 ............................. GAGGACTTCCGGGAACTCGCCAAACGGCTCGA 82333 29 100.0 32 ............................. GAGACGGCGACGGGGAGGACGTACGGCGGCAC 82272 29 100.0 32 ............................. TATGTCGTGGGGGGCGCGGTCCAGTCGGCCCC 82211 29 100.0 32 ............................. CCGCCGCGGGCGCCCCGGGCGGCGCCGGCCCC 82150 29 100.0 32 ............................. CGCGCGCCTTCCTCAACCTGTGGGAAGGCTCC 82089 29 100.0 32 ............................. CCACGGGGCGTTGCGGCTGTAGAACGCGGACA 82028 29 100.0 32 ............................. CCCATCGGCGCCGACAGCGCCGGCTTCTGCGA 81967 29 96.6 32 ............................A GCCGGTTCGGGCTGCTTTATGCCCGGATGAGC 81906 29 89.7 29 .........................G.TC TGGGAGTTCAGCCCGGCCTTCTTCAGCTT 81848 29 100.0 32 ............................. GCCGGTTCGGGCTGCTTTATGCCCGGATGAGC 81787 29 75.9 0 ............T.........CATCAT. | ========== ====== ====== ====== ============================= ================================ ================== 71 29 99.5 32 GTGGTCCCCGCGCAGGCGGGGGTGGACCG # Left flank : TCCAATCCCTGCTCGCTCCGGACGCGCCCCGGGCCGCAGCGGACGGTCAGAGCGTCGACATGGTCAACCTCTGGGATCCCGACGCCGGCTCCGTTCCCGCCGGCGTCAACTACTCCAACGCCGCCCCGCCCGAGACCCCCGACCTCGCCACCTGAGAGCGCCAGCCCATGCCTTCCCTCACCGTCCTGGCAACCACCGCTGTCCCCGACCACGTACGCGGCGCCCTCACCCGCTGGATGATCGAACCCACCCCGGGCCTCTACGTCGGCACGCTCTCGGCCAGAGTCCGCGACGAGTTGTGGACCGTCATCGCCGCCTCTGTCTCCGACGGCGCCGCCGTCCTCATCCACCCCGCCGCCAACGAACAGGGCTACGCCCTCCGCACGGCCGGCGAACGCCGCCGCATCCCGGTCGACTTCGACGGCCTGACGCTTGTCGCTCTGCGGCCCGACCAATACCAAGAACTGGCAAACCCCGCGTAGCGTCGCAGGTCGCGAAGG # Right flank : CCAAAACCTGGACGGGATGCTCGGCCCTCCGAGCAGCCCAGTAACACGATGAAAATCGGATAGCCCGCTGGAGCCACCGTCCCGGTTTCTCCCCTCCACCGTGATCATCTTGTGGCGCGGCCTGGTCTTTTTCAGCGGTACTCAACATTTCCCGCGCAGGTGGGTGATCCCAAACGTGTCCCATTCTGCGCCCATACTGCCGCGCCTTTGGGCTGATCGAGGCGTAGCGGCGTTCGGGTGACCGGCATTTGGTGCGGCCGGATTTCGTGCCTACTGTCTGGCGGCAGTCATCGAACCGGAAACGACTCCGACTCCTTGACATGCGCTGCCATGCCTCATGGCTGGGGTGTGAAGTAGCGGTCTGCCGATTCCCTCACCGCCGACGTAGAGGACGTCCACATGTACCCGCTGAGAATACGCGCGCGGCCAGCAGTTGCGCATATCCGGAATCCGTCGTCCACGAGGCACCGGAAGTCCTGAACCCGGGAGCCGCCTGCCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCAGGCGGGGGTGGACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 95993-97371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINVH010000016.1 Streptomyces sp. HPF1205 16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 95993 29 100.0 32 ............................. CAGGCGGTCTACGCCTGGAGCGTCGTCACCGC 96054 29 100.0 32 ............................. GCCGCTCCATCGCCGCCCTCGCCCGCGACCAC 96115 29 100.0 32 ............................. GCGCTTCCGGCGCCCATGGCCGAGCTGGACGC 96176 29 100.0 32 ............................. GCAGAGGCTGGACTTGGGCCGCCGGGGTCCTG 96237 29 100.0 32 ............................. ACATCGAGCTCGACCGGCAGGATGACGTGTGC 96298 29 100.0 32 ............................. ACGCTGGGAGCCGGCCAGCGCGGCAGCGTCCG 96359 29 100.0 32 ............................. TCGGCTTCGATCGCCCACCAGTGGCGGACGAC 96420 29 100.0 32 ............................. GCCGGCGTAGCCCTCGGCCATGCCTGACGCGC 96481 29 100.0 32 ............................. GTCCAGGGCTTTAGAGAGCTCCGGCCAGGGCA 96542 29 100.0 32 ............................. CAGTTGGGTCCCCACGGCATCGGCCGCGCATT 96603 29 100.0 32 ............................. AGGACGTCATTGCGCGTGCCCTCGGGGGCGCC 96664 29 100.0 32 ............................. CCCGACGCCATCCTGTGCGACTGCACCGATTT 96725 29 100.0 32 ............................. GGGCAGACATGGAACTCAACGGGTGGAATTTC 96786 29 100.0 32 ............................. GCGCGGATCATGATGGGGAGTTCCATGCCGTT 96847 29 100.0 32 ............................. GCTGTAGGGGAGTATGGGCAATCCTGGACAAC 96908 29 100.0 32 ............................. ATCTTCATGACGGTGCTCCGTTCTGTACGGGG 96969 29 100.0 32 ............................. CCGATACCGAAGTCGATGTCCGTGCCGTTGGC 97030 29 100.0 32 ............................. ACACTCGCGGTGGCCGTCGGCGGCGCCGTCAC 97091 29 100.0 38 ............................. GTCCTGGCGTCGTACCACGGCTGGACGCCGACACCAGA 97158 29 100.0 32 ............................. TCGTCCTGCAGTGGATGACCGAAGCCGGCGGC 97219 29 100.0 32 ............................. TCGCGGTCGGCGTCGCCCCGGCGTGGGGTGGT 97280 29 100.0 32 ............................. GCGTCCCGGCCGTAGCCGTACTTCTTGCCAAC 97341 28 93.1 0 .....-...........A........... | GA,T [97366,97370] ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.7 32 GTGCTCCCCGCGCAGGCGGGGGTGGACCG # Left flank : CTGGGGCAACGCCCGGCTCGTGGCAAGTTCGTGCCGGATCTTCTGCGCCTGGCTGTCCTTGCCGCGGTCATGGGCGTAGCCGGGTTTGGCCAGGAACGAGCAGTGGGCCGGGTGGTCCTTGACCGCCATGTCCTGAAACTGCGGAAGGATCTTCCCGAGGTCGTGCAGCCCGGCCCAGAACATCACCGTCTGCCGTGCGGTCCTGAGGGGAAACCCCAGGACGTCGGCGACCGCGGTCCGCTGGCCCTCGGTCAGCACCTCGTCCCATACCGCGCCGGCCATCATCGCCGTATCGACGAGGTGCCCGATCAACGGATAGGGCACCTCCAGCCCTTTGGCCTTCCCCCATAACCGCGGTTCGAGCACGGCTCGTCCCTCCTACGTGCGTTGCCTGAGACTCTCACCGGTACTTCAGCACGGGGGTCTGACATCATGGGCTTGATGCCCGGCGCACTGGTCAAGGTATGGCAAAGCCCTGGAGAAACCGCAGGTCGCGAAGA # Right flank : GGAACGTCGTCATCGAGTGCTCCATGTGAGCCCCGTGTGAGCCCGGACCCCGCTGGACCCTGTGCTACTGACCCGTACAGGCCGGATGCAAACCCCGTCCAACCTGCACAGGCAGCGCTTTCGTGGACTACGCGTCACCCTCCGGGACGGGATCTTCGGGACTTTTAATCCATTGGTTGTGGGTTCGAGTCCCACACGGCCTACCGGGTTCGGCTCCTCCGGGAGCCGCTGACCTGCGGGTTCGCGCCCCGGTCGTCGACAGACGGCCGGGGCGCAGTCGCGTCGGGGCGGCGTCCGTGAGCGATGCGTGAGCGGGCGCGCGGCTGCTGTGGCAGGGACCGGCCGCGATCCGCGCCCGAGCGGCTCTGGCCGGGGCCGAGTTGACGGCAGTCGTTGCGCCCGTCGGCGTTGAGCGCACCGCCGTATTGCCACGCGTGGGCGAGTACAACGTCGCGGATATAGACGGACTGGGCCGTCCGACTTCTCAGGGGCCGTGCTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCAGGCGGGGGTGGACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //