Array 1 347-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESJG010000254.1 Rhodovulum sulfidophilum strain AB22 NODE_255_length_5447_cov_5.36729_ID_9935, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 346 29 100.0 32 ............................. TCCGGTGAAATCAGCGATAGCGCAACCTCCAC 285 29 100.0 32 ............................. GACGGCGGCACGCTGCAAATCCCGATCAAGCA 224 29 100.0 32 ............................. ATCCCTGTGGCAGAGCGCGATCTGATCATGTC 163 29 100.0 32 ............................. ATCCTCGGGCAGGAATATGCCACGCTCTATTT 102 29 100.0 32 ............................. CCCGCCGCGCACCGTGTCCACCGGCTGATCGA 41 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CCGGCCTGCTAAAGAGGATCATTCCTGCCATCGAGGAGGTTCTCTCGGCCGGAAACCTTCCTCGTCCCGAGCCGCCGCCCGAGGCCGTTTCTCCCGCGTTTCCCGATGCGCCGCCGACGGGCGATGCCGGTCACCGATAGTCTATGTTGGTTGTTGTCGTCTCCAACGCCCCACCGCGCCTCCGGGGCAGGCTGTCTGCCTGGTTGGTCGAGGTGCGCGCAGGGGTTTATGTCGGCGACTATTCGGCCCGGACGCGCGAGATGATCTGGGAACAGGTTCTGGCCGGGCTTGATAAGGGGGATGCCGTCATGGTTTGGAAGGCGCCGACCGATCAGGGCTACGACTTTGTGACGGCAGGTCAGAACCGCAGGATGCCGGTGGATTTCGACGGATTGAAATTGGTCAGTTTCTTCCCCGAGCCACCAAGCCGATAGGCGGAAGAGGACGGTAGGCTCTTTGACATCGTGAAAAATTTTTTAGATCAACGGTTTGCAGTAAGA # Right flank : GCCGTAAGAAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2455-1878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESJG010000340.1 Rhodovulum sulfidophilum strain AB22 NODE_341_length_2498_cov_4.53016_ID_10107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2454 29 100.0 32 ............................. GGTGTCGAGAACGTCAGCAAGATCAAGTCGAT 2393 29 100.0 32 ............................. GGCAGGCCGCCTTCCGCGCCGGGAAGACCGTA 2332 29 100.0 32 ............................. ACCTTCGAAAAATCGCAAGAACAACGCGGCCA 2271 29 100.0 32 ............................. CATCTGGGGCGTCGTGAAAATGCAGAGGTTGA 2210 29 100.0 32 ............................. ACATCAGACTCGCGTTCTGTTCCGCCCACAGA 2149 29 100.0 32 ............................. GCACCGGCCCACATGGCGATGCCCGGATCACC 2088 29 100.0 32 ............................. AGGCTGATCGCATGGCAAATGCCAGGAGAACC 2027 29 100.0 32 ............................. CTTCCTGTAATGGTTCGGTCCGGTTTGACCCT 1966 29 96.6 31 ..........................T.. GAGGAGGGGGCCGCACTCTGATAGAAAGTTC 1906 28 75.9 0 .C....T....G.G.-.T........G.. | G [1885] ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.2 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GGGGATGAACCGCCGTAAGACACACTTATCCTCTTTTTGTGCC # Right flank : AGAGCTCGCTAATCATTCCGAATGACTTCCGGTTGTCGTGTACAAAAGCGTCGCGTGGCCGTGCGTCAGCGCTCAACAGATTAACTCCCCCTGACCGCCTCTCTGACCCTTCGCCCGATCTCGCTGGGCGAGGGCGCGATCCATCCGATCAGCGCGACCAGCACGATCCAGGGCGGGATGACATTGACGATCACGGTTTCGACGCGGTCGGCGCGGAGGCGGTTCTCGGATTGCTCCTGGCGGATCTCGCGGGCGCGCGGCCGAACGATGGACGGCGCGTTCTCGACCTTCTGGCCCTGCACGTTCTCGGCTCCGGCCTGGACATTCGCGGCGACGTTTGGCCCTAGCGGAACCGGCAGCCCGCCGCACCCGGCCAACAGCAGCGCCGCGAGGAGCACCCTCATGCGCCGCCCCAGCGGAACGGCTCCTCGGCCGGGATACCGTCGAGCCCCTCATGGCAGAGCTGCCGGGCCTTGTTGCGGCGGATCGCGAGCCCCCGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //