Array 1 46646-48264 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVKO01000005.1 Bacillus cereus strain AFS098983 AFS098983_104_D6_Contig5_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 46646 32 100.0 35 ................................ AGCAGTCATGTCAGCATCTTGGATACGGCTACGAG 46713 32 93.8 34 ...T.................G.......... CACTTACAACCGATGGGAAAGGATATGCGGTTGT 46779 32 84.4 35 .........A.A.GA......G.......... ACAGATGAACACATAGAGCAACTATTCAAAGCAGG 46846 32 93.8 33 ............G........G.......... CATGATAGTAGAACCATGTAAGTTGATTGCACC 46911 32 84.4 35 .......T...CG.A....T............ CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 46978 32 90.6 34 ..........C.T.A................. CTCCTTATTTACTTAGAAGAAACGACCGTGTTAT 47044 32 100.0 35 ................................ AATCTCAATCGCTTGTGATACTTCGGGAATACGGA 47111 32 84.4 33 A........A.A.GA................. ATGATTAAGAACGTACCGATCGCTCGTGCTCAG 47176 32 93.8 34 ............G........G.......... GATACATTAGAAACCATACAGGCTCCGTTTTTAT 47242 32 87.5 35 ............G.A..G...G.......... AATAAGTAACCCTGCATTCACTTCACTATTAGCAT 47309 32 100.0 33 ................................ CACTTTCCTTTCTCGTATACGTGATACCAAAAA 47374 32 87.5 35 ..........C.T.A......G.......... ACCAGGAATAGTTGTAGTAATTAGTAAGCGGGAAC 47441 32 81.2 35 .......T...CG.A...TT............ CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 47508 32 87.5 33 ........A...G.A..G.............. TTTGATAACAACATATGTAAAACATAAGTAAAT 47573 32 84.4 34 ....T.......G.G..G...G.......... GCATCGTAGAATGAAATTGTTAATCACGATTTTT 47639 32 96.9 34 .....................G.......... GCATCGTAGAATGAAATTGTTAATCACGATTTTT 47705 32 96.9 33 .....................G.......... GTGGATGGATTACAACAGAAGGTGGGAACGCTG 47770 32 90.6 33 ............G.A......G.......... TAATTTCGAGTATGATTAAGATACTTTAATTGA 47835 32 93.8 35 ..............A....T............ AACAAAAGAAATAAGAACGAATTAAGAGGTAAAGA 47902 32 93.8 34 ..............A....T............ CAGTGTTGTTACGCTCAGTTGAAATCCCTAGATT 47968 32 100.0 34 ................................ TAGTGTTGTTACGCTCAGTTGAAATCCCTAGATT 48034 32 90.6 34 ............G.G......G.......... ACCTCTAGATAGGATTTTGTAGTAATAGTTTGTC 48100 32 100.0 34 ................................ AGTTTTAAGCCTTGTGTATCCGCCACGCTCTCCA 48166 32 90.6 35 ..............A..G...G.......... TTCCATATGGCTATATTGACAATCTTCGCGCTCTT 48233 32 87.5 0 ........C.....A..G.T............ | ========== ====== ====== ====== ================================ =================================== ================== 25 32 91.8 34 GTCGCACCTCTTATTGGTGCGTGGATTGAAAT # Left flank : CCTATGTTTTTTATGGCAGTATTAATACACAATTAGCAGAAAAGACAGGTTTTACTAACGGAGATGCGGAAAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCGTCAGCAGCACGTCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGAGCATAATTCAAAACTTGGTCAGTACTCTTCTGCAAAAGTACACCGTTTACTGGACATTAAGCGGAATATTGACGAACCAAAAACAATTGATGACTATACCATCTTAGTACATGAATTAGATGGTTTAAAAGTTGCGATTATTGATGGACTATAATGAAGAATTAGGTGCGAACGTATAGCACACATGAAATTTCTAGTACATTCGCACCTGAATTTTCATAATTTGTGATTAAAATTTATGATTTTCTATACAAATTTCTTTATTAAATAAAAAAACTTGCATATTTTTGAACAGAATTAACGTATTTGTTTATGATTTTGAACACAAATCGGT # Right flank : TTCAACTTTCCTGCTATAACTCTTTTCCATGCGAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGTCCTTTAATTTTTTTGGTGCGAACGTATAGCACACATGAAATTCCTAGTACATTCGCACCTGAATTTTCATAATTTGTGATTAAAATTTATGATTTTCTATACAAATTTCCTTATCCAATAAAAAAATCGCATATTTTTGAACAAAATTAACGTATTTGTGTATGATTTTGAACACAAATCGGTGTCGCACCTCTTGTAGGTGCGGGGATTGAAATCTATTTAAATCATTAGTTTTACAAATTATTGGAAGTCGCACCTCTTGTAGGCGCGGGGATTGAAATCGGTTATTATTAAATCGCCAAACGTTAGCGCTATGGTCGCACCTCTTATTGGTGCGGGGATTGAAATAACATTATAGAAATGATTGAGCGAGAGCTAGGAGAGTCGCACCTCTTGTAGGTGCGTGGATTGAAATAAAACTT # Questionable array : NO Score: 8.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATTGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 48525-49614 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVKO01000005.1 Bacillus cereus strain AFS098983 AFS098983_104_D6_Contig5_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 48525 32 96.9 34 .....................G.......... CTATTTAAATCATTAGTTTTACAAATTATTGGAA 48591 32 93.8 35 .................C...G.......... CGGTTATTATTAAATCGCCAAACGTTAGCGCTATG 48658 32 90.6 35 ............A.T......G.......... AACATTATAGAAATGATTGAGCGAGAGCTAGGAGA 48725 32 100.0 34 ................................ AAAACTTACGAAATCAACGTAGATTTAATAAAAG 48791 32 90.6 33 ..........C......C...G.......... ACAATATGCGTGAACTTCAATCATCGCTTTTTT 48856 32 93.8 33 ............T........G.......... AGCATTCGTGCAGGCAAAGTAGCACGTGCTTAT 48921 32 90.6 35 ............A.T......G.......... AGCTTTCTGAATTGTTGGAAATGAACAAGGTGTAT 48988 32 93.8 34 ...........CA................... CACATTAAGAATTTAGGAACGAATATTGTAAAGC 49054 32 93.8 34 .................G...G.......... GATGTAATTGCAGGGATTGGAATGCTGATTGGTA 49120 32 96.9 34 ............T................... GTTAAGACAAGCGGATTTAGCTCATGAACTAAAT 49186 32 100.0 33 ................................ ATTTGAGCTAGTGGTAAGCGCATCATTGGTAGT 49251 32 90.6 35 ..............G......G.....A.... TATAGTACTTGTAGTTTGCGAATACTGTTTTTGCT 49318 32 90.6 34 ..........C......G...G.......... AAGATTTACACGTAACTGAAAAGCTTGATTATGT 49384 32 93.8 34 ............T..............T.... GTCAATGTTAGGGAAAGGAAGCATGCTAAAAACG 49450 32 93.8 36 ..T.........A................... ATGATAAGATAGGCTTTTATGTACCTTTGTATTAAA 49518 32 93.8 33 ............A........G.......... ATCGAACACCAGAAGGAATCCAACGAGATAGAA 49583 32 87.5 0 ...........C.......T.C.........C | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 93.6 34 GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Left flank : CCCTAGATTGTCGCACCTCTTGTGGGTGCGGGGATTGAAATACCTCTAGATAGGATTTTGTAGTAATAGTTTGTCGTCGCACCTCTTATTGGTGCGTGGATTGAAATAGTTTTAAGCCTTGTGTATCCGCCACGCTCTCCAGTCGCACCTCTTATAGGGGCGGGGATTGAAATTTCCATATGGCTATATTGACAATCTTCGCGCTCTTGTCGCACCCCTTATAGGGGTGTGGATTGAAATTCAACTTTCCTGCTATAACTCTTTTCCATGCGAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGTCCTTTAATTTTTTTGGTGCGAACGTATAGCACACATGAAATTCCTAGTACATTCGCACCTGAATTTTCATAATTTGTGATTAAAATTTATGATTTTCTATACAAATTTCCTTATCCAATAAAAAAATCGCATATTTTTGAACAAAATTAACGTATTTGTGTATGATTTTGAACACAAATCGGT # Right flank : CCTTTTTGAGATACTTACTGCTTGATATATAATATTTCATATTTCGACTCTTATCCTTCTCCTGCTCATCTTTCAAATTTTCTCGACGTTTATTCAAATAAAAATAAAAAAGCTGAATCCCTTCTCACAGAAGAGGTTTCAGCTTTTAATTTTTTTATCATATCCTTTGCAACAAGTTGCCATTAGGATAGTGTATCAGCAACTTGTAGCTATTACTATGAATGCTATATTACGCAAAATTATTACAGTTTTTTAGTTTTCTATTTTTATTATATGCTCTATTTTTACATTTATTCTTTATTTCGAAGTTTGAAAAATAGAAGTTTTGGACAAATTATAACTAAAAAACAAATGAGGTGTAATATATGCCCTGGTTTAAAAAACCCCGTTCAAAACTTGGAAAATTCATAGATAAACACGATTTAAAACAAGTAGATATTGCTAAGATTAGTGGACTAAGAGAGTCAACTGTTAGTCGTTTAGCAAATATAGACAGTGTT # Questionable array : NO Score: 8.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //