Array 1 2117505-2119180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZJ010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA7 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2117505 29 100.0 32 ............................. TACGCCCCGTTTTTCTCAGCGACCTCACACGA 2117566 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 2117627 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 2117688 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 2117749 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 2117810 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 2117871 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 2117932 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 2117993 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 2118054 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 2118115 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 2118176 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 2118237 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 2118298 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 2118359 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 2118420 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 2118481 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 2118542 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 2118603 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 2118665 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 2118726 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 2118787 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 2118848 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 2118909 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 2118970 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2119031 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2119092 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 2119153 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2135313-2136313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZJ010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA7 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2135313 29 100.0 32 ............................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 2135374 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 2135435 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 2135496 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 2135558 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 2135619 29 100.0 26 ............................. CGTCACTACCGAGACCGAGACCGAGA 2135674 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 2135735 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2135796 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2135857 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2135918 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2135979 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2136040 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2136101 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2136162 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2136223 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2136284 29 96.6 0 A............................ | A [2136310] ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //