Array 1 1328878-1320036 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013292.1 Rathayibacter toxicus strain WAC3373 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1328877 29 100.0 32 ............................. GTTCCCTCCTGGCCCTCCGGCTAGGCCGTGGT 1328816 29 96.6 33 ............................T GAAATTCGTGGTCGTAGAAAAGTCAAGTCCTCA 1328754 29 96.6 35 ............................A ATGTACGAGTCGTCCGCCAAGGTTAAACCATGGGA 1328690 29 96.6 32 ............................T GTCCCGCGCGGACTGGCGTGGAGCGAAATGGA 1328629 29 96.6 33 ............................T GATTTCGTGTTTGGGTGTGTAGAAGTCGGTTGG 1328567 29 96.6 33 ............................T GTCTGAGCTAGATAGCCATGAGTAGTGGCATGC 1328505 29 96.6 32 ............................T CGGTAGCCAGACCTCGACGCTGTGGCTGGACA 1328444 29 96.6 33 ............................A TTGTCAAGACGATTATTCGACTTGTCGTCATCA 1328382 29 100.0 32 ............................. AATCGTTGAACACGCCGAACAACTCATTGAAG 1328321 29 100.0 32 ............................. CCGCCCATTATCGCCACGAATGGCATCTAAAG 1328260 29 100.0 32 ............................. ACTGGATGGCCTTGTTAAGGGCGGCATTTTAG 1328199 29 96.6 33 ............................G ATAGTGTTATCTTTCGGTTCAACAATAGCAAAA 1328137 29 96.6 32 ............................T GCTGCACGGCGCGGACAATCTGATCCTTTTGA 1328076 29 100.0 32 ............................. TATTCTTCATACGTCGCACGAGATGAAGACTT 1328015 29 96.6 32 ............................T CTGTGACGTCAGTTTTCTGGGGTTGGGGTCGA 1327954 29 96.6 32 ............................A TCTGGTGAGAATCGCTACTGTAGACAGTGCGC 1327893 29 96.6 32 ............................T GGCAGCCCTATCGAGCTTTCTGAGGACCTCGA 1327832 29 96.6 32 ............................T CAACTTTTTGGAGGCGTATCATCCGTGGGATA 1327771 29 100.0 32 ............................. AGCTAAAGTGAAATAACCGTTATCAGCGTTAC 1327710 29 96.6 32 ............................G TCATCCAGCTGTGTATCTGTCCACTGCCGCCA 1327649 29 100.0 33 ............................. TTAAAAGGGTTTTGCTTCCTTTTATTGATTTTG 1327587 29 96.6 32 ............................A TCGGTATCGGCGCTTTCGTGAGCCTGCAAGGC 1327526 29 96.6 33 ............................T TCTTCAGCGAAGAGAGGTTCACCTTCGCATGAG 1327464 29 96.6 32 ............................A AGTATGCTCCTCCGTCAAATCGGCCTCAGCGC 1327403 29 100.0 32 ............................. CTCGACGGTCTTGCCGACGGCATTACGAGTAT 1327342 29 100.0 32 ............................. ACAATAGCCACACTCACCGGCTCGGCCAATGC 1327281 29 100.0 32 ............................. AAAACCGAGTGCATCAACGGTCACCCGTTCGA 1327220 29 96.6 32 ............................T TAGCCCTTCTTTCTAAGATACGGAGTGTCGAC 1327159 29 96.6 32 ............................G GCGGCTTTCGGAACCGAGATCGATTTCAGTGA 1327098 29 96.6 32 ............................T GTTAAACGTGATCCAGGCCCCGCAGATGATAA 1327037 29 96.6 32 ............................T GCGAGTCGAGGCACCGGCTCACCTGTCGACCC 1326976 29 96.6 33 ............................G GATTCGACGGCTTCATCCGACAGAACGTCAGGA 1326914 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 1326853 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 1326792 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 1326731 29 100.0 32 ............................. GATCGGCCCCGCTTTTTTAGGCCAACCTTTTT 1326670 29 96.6 32 ............................T ACCCGCCCCGAGGAAGAGGTTAAGCGGTCTGA 1326609 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 1326547 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 1326486 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 1326425 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 1326364 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 1326303 29 100.0 33 ............................. GAAGCACAACTCCGCCAGCAAGACACTTATGTT 1326241 29 100.0 32 ............................. TTTTCCGGCAATCTCCGCGATATTGGTCTGGA 1326180 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 1326119 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 1326058 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 1325997 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 1325936 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 1325874 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 1325813 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 1325751 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 1325690 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 1325629 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 1325568 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 1325507 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 1325446 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 1325385 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 1325324 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 1325263 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 1325201 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 1325140 29 96.6 32 ............................G CCCCCTTGGCCATCCCTTTTAATCAGCTTGCG 1325079 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 1325017 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 1324955 29 100.0 32 ............................. TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 1324894 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 1324833 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 1324772 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 1324710 29 96.6 32 ............................G GCGACAGGGGCGCGCGCGACATCCCCGAATTT 1324649 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 1324588 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 1324527 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 1324466 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 1324405 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 1324344 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 1324283 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 1324222 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 1324161 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 1324100 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 1324039 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 1323977 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 1323916 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 1323855 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 1323794 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 1323733 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 1323672 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 1323611 29 100.0 32 ............................. TCCACGGCCACTAAAACCTTCGATTTTTCTAC 1323550 29 100.0 32 ............................. CGCAAGCGCTTCCACCATCAGATCGGCTACCT 1323489 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 1323428 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 1323367 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 1323306 29 100.0 32 ............................. ACTAGGTGAAGTACCGATTCGAGACACCAGCA 1323245 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 1323183 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 1323121 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 1323060 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 1322998 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 1322937 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 1322876 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 1322815 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 1322754 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 1322693 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 1322632 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 1322571 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 1322510 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 1322449 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 1322388 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 1322327 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 1322266 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 1322205 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 1322144 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 1322083 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 1322022 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 1321961 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 1321900 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 1321839 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 1321778 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 1321716 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 1321655 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 1321594 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 1321532 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 1321471 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 1321410 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 1321349 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 1321288 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 1321226 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 1321165 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 1321103 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 1321042 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 1320980 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 1320919 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 1320858 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 1320797 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 1320736 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 1320675 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 1320614 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 1320553 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 1320492 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 1320431 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 1320369 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 1320308 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 1320247 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 1320186 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 1320125 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 1320064 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= =================================== ================== 145 29 97.6 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : CAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTCA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //