Array 1 39707-38275 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAO01000015.1 Escherichia coli strain 36-1BK entry15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39706 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 39645 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 39584 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 39523 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 39462 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 39401 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 39340 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 39279 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 39218 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 39157 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 39096 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 39035 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 38974 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 38913 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 38852 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 38791 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38730 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38669 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38608 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38547 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38486 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38425 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38364 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38303 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66472-65406 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAO01000015.1 Escherichia coli strain 36-1BK entry15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66471 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 66410 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 66349 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 66288 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 66227 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 66166 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 66105 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 66044 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 65983 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 65922 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 65861 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 65800 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 65739 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 65678 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 65617 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 65556 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 65495 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65434 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //