Array 1 30111-29449 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VLIP01000003.1 Riemerella anatipestifer strain CCUG25011 CCUG25011_NODE_3, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===============================================	==============================	==================
     30110	    47	 100.0	    30	...............................................	CTAGAAGGAGAAGAATATTTAGAATATGAT	
     30033	    47	 100.0	    30	...............................................	AGTAGCAATTAAAATAAATTGTTTCATAAT	
     29956	    47	 100.0	    30	...............................................	TAAAGAAAGATATTTCAGACAAAATCAAAT	
     29879	    47	 100.0	    30	...............................................	TATACTATTTTTAATTTGTACTCTTTTACC	
     29802	    47	 100.0	    30	...............................................	TAAGTTTAATTTAGATATTTCTTCTTGGGT	
     29725	    47	 100.0	    30	...............................................	CTCTTTTCCTCGATTAAAAGCATCTTGTGC	
     29648	    47	 100.0	    29	...............................................	TGCTGGAAAAATCAAAGCCTGCTCCATAG 	
     29572	    47	 100.0	    30	...............................................	TTTCGGCATTTTCTTGTGCTACTAAAACCT	
     29495	    47	 100.0	     0	...............................................	|                             	
==========	======	======	======	===============================================	==============================	==================
         9	    47	 100.0	    30	GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC	                              	       

# Left flank :   TCTTTGTGGTAGTTTGTAGCTTAAATTTATTTTTTATGAAGTTAGATTTTGAGTTCAAAATCAGTTTATGAAAATGAAAAAGGCTTTAAGTTTGTTGCGAAACTTAAAGCCGAGATGAAACAGAAAATTCCCAGTCTGTTATATCCTGAAACAAAGGAGGCTTTGTCCCCCTTACTTCTAAAGGCAAATTTAGAAATATTTTTTCAAATGAAAGAATTTATAAAATTGATTAAAAATATTTTCTCGAAAGAACCATTTGAGCAAGATATAACTATTAGATTTAGTTTATCTTTAGAGCAGATAATATTTATTATTTTAGCTTTAGCAGGAATGATATACATCTTCTTAAAATAATATTATGAAAATAGAAGATATACATACCTCGTGGATACAGGAACAGATAAAAGAGCTAGGTGTTAAACGAAAAGACCTAACAAAAGACCTGTTACTAGATAGAAGTTATTTAAGCCATCTGTTTTCTAGTGATGACAAACCGCATA
# Right flank :  CTCAAAAAATAAACCCATTGTTTTTCAATGGGTTTTGCGTTTTTATAGGATTAGATTTTTTACTATTTCTTCTCTATTTTTGTTTGATGTAAAGTCTTTTTCTATTCCTAAAAAAGTTCTAATTGCTGATAGGTTGGTTTGGGTTCTTCTTTAGCTCTCGCAAAGAAAATTTCTATATCTCCAAACTGTTTATCTGTAATACTCATGATAGCCACCTTACCGTGCTTGGGAAGTATTGATTTTACTCTTTTGATGTGTACTTCTGCATTTTCACGACTTGGACAATGCCTTATATAAATGGAAAATTGGAAAAGGCTAAAGCCATCGTCCTCTAAGCGTTTTCTAAAAAGTTGAGCTGCTTTCCGCATCGCTTTAGTTTCTGTTGGTAAATCATATAGCACCATAACCCACATAACTCTATAAGCATTAAAACGATTAAACTTCATAAAACTCAGGCACAGATATTTGTCTTTTTTCTCCAGTATAACATTTATAAACAG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.09%AT]
# 	Reference repeat match prediction:         R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-6.30,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [4.5,4.87   Confidence: LOW] 

# Array family : II-C [Matched known repeat from this family],   
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