Array 1 6392-5168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAADH010000009.1 Streptococcus agalactiae strain iGBS205 NODE_9_length_77013_cov_64.6249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6391 36 100.0 30 .................................... TATTGAAGATTCTGTAAAGACAAAAACCCT 6325 36 100.0 30 .................................... CCAATATCTTTGAAGAAGGGAGCTATATCA 6259 36 100.0 30 .................................... TTTTCTTTCTTAACCAATTACTTAAACCAT 6193 36 100.0 30 .................................... ATCATCTTAACTAAAAACTATATTGAAGAT 6127 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 6061 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 5995 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 5929 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 5863 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 5797 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 5731 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 5665 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 5599 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 5533 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 5467 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 5401 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 5335 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 5269 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 5203 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //