Array 1 4365018-4360968 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024613.1 Shewanella algae strain TUM17379 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4365017 28 100.0 34 ............................ ATGCCGCCTGCGCCATCAACCTGAACTGTTGCAG 4364955 28 100.0 32 ............................ TGTCCGAGCGGATATCGCCGTAAAGCGTCTTG 4364895 28 100.0 32 ............................ AGTGGCTAATTCCAATAGCGCTGGTGATGTGT 4364835 28 100.0 32 ............................ ATCTGCTTAACCATGCGCTGAATCGCTTCTTC 4364775 28 100.0 32 ............................ ATTACGCTGCTGTGCATAGTGCTGCACCTTGG 4364715 28 100.0 32 ............................ TAGCGACCTGATGCAGTCATACAACATATATG 4364655 28 100.0 32 ............................ TCAAACTTATCGAGTTCTCCAGCCTTCTTAGA 4364595 28 100.0 32 ............................ TTAGTAGACTATGCGCTGGATGACGATTGACG 4364535 28 100.0 32 ............................ AATCTCGTCAAACCTGGCCAGCTTTTGTTTGT 4364475 28 100.0 32 ............................ GCCGGTGATTGGGCGCTTTTCTCCGTCTAAAT 4364415 28 100.0 32 ............................ ATACAAATGGCATGGTTTGGCGCGGTTGCAGG 4364355 28 100.0 32 ............................ CGTCTGGGACTTCTGCCTTGACTTCTTCCTCG 4364295 28 100.0 32 ............................ ATCACGCGAGCGACATATAGGGCTTGTGCGGC 4364235 28 100.0 32 ............................ AATAAGTGGGTCACGCATAAGCCTTATCAGCG 4364175 28 100.0 32 ............................ TGACGGACGCTTTATTATTACAGCAAGCGATG 4364115 28 100.0 32 ............................ GCCGAGGTGTCATCGCCAAAGCTTAACAGTCG 4364055 28 100.0 32 ............................ GAGAACAAACCTAATCCAGTATTCACACAAGC 4363995 28 100.0 32 ............................ TTTAGCGCCCTAAGATGCTCACGGATTGGCTT 4363935 28 100.0 32 ............................ GCTTGATAATACCACGTTGCCTAGCTTGATTT 4363875 28 100.0 32 ............................ ATGCGCTGAATCGCTTCTTCTGGCTTGAGTTT 4363815 28 100.0 32 ............................ AATAACCATGTGTTTAAATGGCCAAACAGAAC 4363755 28 100.0 32 ............................ ACAACATTATCGATGTTTCTAGTGACACTATT 4363695 28 100.0 32 ............................ ACCATGATTGCCATGGTATGGCTGCTGATGAC 4363635 28 100.0 32 ............................ GGTCACTGCGTTTGTAGCGTAGTCACCAGTGC 4363575 28 100.0 32 ............................ ATGCTGGTATTATCCACCCGGCCGCTGGTCTG 4363515 28 100.0 32 ............................ ATCAGATTTCCAGTGTTGAACGCGCAATAAGT 4363455 28 100.0 32 ............................ ATCTTTTCAAATCGAGACTTGGCCAGCTCCAT 4363395 28 100.0 32 ............................ ATTAGAATCAACGTACTGTTGAATAACTTCAC 4363335 28 100.0 32 ............................ CGAGCACTCAGAAAGCTACGACACCAGCACAC 4363275 28 100.0 32 ............................ TGGCAGTGATCATCATTGAGCCGTTAATATCA 4363215 28 100.0 32 ............................ AACAAGAGCCGCAGGGGACTTAATAGGTCTTG 4363155 28 100.0 32 ............................ CAGAAACTTGTTTGTATATTCCTCCTTGGCTT 4363095 28 100.0 32 ............................ AAACGGCGTTACTTCTGTGTCGTAGTATTTGT 4363035 28 100.0 32 ............................ AGTCAGTTCCAGCAATGCGATCAACTATCTTT 4362975 28 100.0 32 ............................ ACTGAGATGCTCTACAAATACCTGGGGAACGG 4362915 28 100.0 32 ............................ GAAATAGAGCGGCACCCTGTTAAGACCTTTCA 4362855 28 100.0 32 ............................ ATTAGAATCAACGTACTGTTGAATAACTTCAC 4362795 28 100.0 32 ............................ TTATCACTGCGGCAATAGCCCCACCAATAGCA 4362735 28 100.0 32 ............................ AATGACTCAGAGCGCTCCACACCACAGTCTGC 4362675 28 100.0 32 ............................ AATTAAATCCTTGTCTAAGTGATAACCATAAC 4362615 28 100.0 32 ............................ ACGCTCTTTGCGCTGGGCATAGATACCTTTTA 4362555 28 100.0 32 ............................ AGTTAGCCCTAAAGCGCCCTGTGTCGACCGGT 4362495 28 100.0 32 ............................ TATCAAACCAATCATCAAACTCTTTGTCTGTC 4362435 28 100.0 32 ............................ TATAGCATACTCGATAAGTGAAAGCTGAAGAG 4362375 28 100.0 32 ............................ AACTAGCGCAAGACGTGGTTAACGGTGACGTT 4362315 28 100.0 32 ............................ TTAAATCGCAAATAGGCCTAATCTGCCAACTA 4362255 28 100.0 32 ............................ ATTACGCTGCTGTGCATAGTGCTGCACCTTGG 4362195 28 100.0 32 ............................ TTGTCAATGTCGCGGTTTTAACAACTGGCTTT 4362135 28 100.0 32 ............................ GCCCTGAATGCGTCTATCGCCAGCCCTCTCTC 4362075 28 100.0 32 ............................ AGGTACTGGATAGGCTCAATACTGAATCAGAT 4362015 28 100.0 32 ............................ AAGGGCTGGGCAGTTGCCGCTGGCATCACTCA 4361955 28 100.0 32 ............................ GGGCAGCCGTGGAACGGCGCCACCGGCAATGA 4361895 28 100.0 32 ............................ GACCAGAAACCGCCGCCCGGCGGTTTTTTACT 4361835 28 100.0 32 ............................ TTACTTGCGAGTTAGCCAGTACAGGACGGCTA 4361775 28 100.0 32 ............................ ATCAAGTTTTCCAGCCGCTGGGCGTCCATTGC 4361715 28 100.0 32 ............................ AGGTGCGAGTTAATCCAGGACGCCCTTAACGA 4361655 28 100.0 32 ............................ GTTACAGCGAGCGTAAGAAGACAGTGAAGGTT 4361595 28 100.0 32 ............................ GTTCTCAGGGGTGAATGTCAGGATGCCTCGGC 4361535 28 100.0 32 ............................ TCACAGTCAAACGCATCACGCAACTTTTCAAT 4361475 28 100.0 32 ............................ CGCCAGTTTACGGGATACAGATTTGCCCAAGT 4361415 28 100.0 32 ............................ AGCCGCAAACCCTCAACATAATCACTACCTCA 4361355 28 100.0 32 ............................ AGCGTGAAGAGCAAGAAACCATTATGGCCAAC 4361295 28 100.0 32 ............................ GATAGAAGTGGATGAGCAGAGCCAATGGCCCA 4361235 28 100.0 32 ............................ GTCCGAAAAGCGAGCCAACTAAGATGATGCGT 4361175 28 100.0 32 ............................ CAGGAGTGTAATAGTTGCCAGTTACGGGAGAC 4361115 28 100.0 32 ............................ TCCAATCCCAACGTCTTGCGCAACGTAGAGCG 4361055 28 100.0 32 ............................ ATGGTCGGCTGAATGTGATGGTTACCCCGCCC 4360995 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 68 28 100.0 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCTTTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACTACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : GTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAATATCCGAATTTCCTGCATTTATGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCTGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGCCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGACCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTATCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACACCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTCGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //