Array 1 411804-411649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFA01000001.1 Streptomyces californicus strain NRRL B-2895 contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 411803 33 100.0 28 ................................. GGACGGCGCGGCCTCGGATCCCTCCGTT 411742 33 100.0 28 ................................. CCCGGGCGCACTCCTCGAGCGCGCTGAA 411681 33 90.9 0 .............................C.TC | ========== ====== ====== ====== ================================= ============================ ================== 3 33 97.0 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT # Left flank : TCGCTGCCGCTGGAGGACCGGGTGCTGCTGGTGGCCGCGTACTGACCCACCAACCTCACCCTGCGTCAACTCGCCGCGCTCTTCGGCGTCTCGAAGTCGGCGGCCGACCGGATCGTCGCCCACCTCGGGCCGGCTCTCGCCCTCCAGCCCCGGCGGCGGTTCCGCAAGGAGGCCGTGCTCATCGTGGACGGCACCGCGGGTAGGGAGGCAACGCCGGATCCAGCCCCCGGGCCACCACTCGAACCTGATACTGCAACGGAAGCGAAACCGCCACCCATCACACACAAGCACCCAGCACTGACATTGAATATCGCTACTGGCGTACCGACGGTCGTTTCTCGATCAGTAACGGTGGATCAGTAACGGTGCGCGGTGCTCGCCTTGGCGACCTGGCAAGCTGCAGCTGGACAGAGTGACGGCATGCGTCTGACTGAGCGCCTCACCCCCTCAAGAATGGCAAAGAAAATGCAAAGCCCTTCTTAAGGCGCAGTTCAGGAAGT # Right flank : TCAGACTGTGTTGTTCGGCCTTGACGGCGCCCTCCACAGCGCAGGGTCACACGCCCAGGCACCTCACCGTACGGACCCTAACCGAGGTCTGGCATTGAACCTTTGCCAAGCTGGCGGTGTTGACCGCGAGCTGGACACGCCTGCGCAATGGCGAAGCTCCTGACAGACGGATCTCGACCAAGATCACCTGTGCCCGCCCGGAGCTTCGCGTGCTCGTACACCCATCCTCGGTCGATGTGCCCCATCGCGGTGGTACGCCGCCGTCCCAGCCTTCCCCGCTGAGAAGTTCCAGCACCCCTTTCCCCGATCTCACCCTCAAGGCGCCCCCACCCGTTCGACCACTACCTCCACGCTCGTATCCGTGCTGGCATGACATGAAGGGCCGCCTTCGTCCTCCAACCTCACCCCGAGCCTCGCACCGCGGCAAGACCCTGATCCAGCTGCACCCGAGCGAGCCGACCAAGAACGAAGAAGAAGCCCACCGGCGAACCGGTGAGGCT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 133877-134210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFA01000022.1 Streptomyces californicus strain NRRL B-2895 contig22.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 133877 29 100.0 32 ............................. GTCCTCCACGACCTCTTCCCAGGTAGTGCCGA 133938 29 100.0 32 ............................. CCGCCGCTCGTACGGGCCATCGCTGCCGCGTT 133999 29 100.0 32 ............................. TTCGTCTCGAACTGCTGGCCCAGGTCCGAGGT 134060 29 96.6 32 .C........................... CTCGCGAAGACCCTCGCCCAGTCCTGGGGCAA 134121 29 96.6 32 ...........A................. GCTGCGTGGCTCGCCTACCGTCTGGGCTCCGA 134182 29 86.2 0 .............A..T........G..T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCGAGCGCGGGCATGCGTGATGGCTCCTGTGGCGGACACGGGGACGGCCGACGACCGGGGAGGGGAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGGGCCCCCGGCTGCCGGGTGGCCAAAGTTGACGCGTCGAAGTCTCGCCGCGCTCCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGACCCTGGCGACCCGGGGGCGACGGGCTGCCGCCAACAGTCCGGTGTGCGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCGGGGGTGCTGAACTCCGCCCACCTGGCGACCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAAAACGACCCCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : TACCCATCCCGATGCGATGCCGTGGTGAGTCAAATGGCCTCGGGCGCGGGTGATCCGTCCTTCAGTCAGGCCCGCCCTACACCCACGCCCCCCATGTGCAGATCTATGCACACAAGCACTCTTACGGGAACAAGCGCTGGAACGCCCTCTTGAACAGCGCTACTTCGTGCCAGATCACGATGCAGACAACTACAAACCCCCGCAGCCGGAGGAAGCCCATGTCGTTACAGTTCATTGGGATCGACCCGCAGACGGGCGATGACGAGAGCCCGACCGCGTGGATCGACCGGGAGAACGGGGAGCTCGTTTTCCAGGGGTGGAAGCCCGGCCCCGAACTCGAAGCCGAATGTGCCGCCCTCGAACTGTCTGGGCACGCCGTAGGAATCCCCGAGACCGAAGCCGAGGTCCGCATCCCCGCCAGGATGGTGGACATGATCAGGGAGGCATGCGATGCCCTCGAACGCGCCGACGGCGTTCGCTGACCTGCTGGCCAAGTGCGA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 135449-136637 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFA01000022.1 Streptomyces californicus strain NRRL B-2895 contig22.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 135449 29 100.0 32 ............................. GCGCCGGCGGTTTCGGTGGACCTCTCTGCCCT 135510 29 100.0 32 ............................. GACGCCAAACGCAGCGCCTCATGGACGGCGTT 135571 29 100.0 32 ............................. AGCCAGCCGACCACGGTCACCGGGATCGAGTG 135632 29 100.0 32 ............................. TCGTGAGACCGCCCCACGCGCGCGCGGAGGGT 135693 29 96.6 32 ............................T CAGTCAAAAACCTTCGCGAAAAGGACATTCAG 135754 29 100.0 32 ............................. CACACCGCCAAGGCCCGGGAGGCCCGCAACCA 135815 29 100.0 32 ............................. ATGTTCGGTTCCGGATGGGACACCCTCAAGGG 135876 29 100.0 32 ............................. TCCCGGCGCAGGGCTTCGACGACCAGGGCAGT 135937 29 100.0 33 ............................. GAGCTCGCGCGTATCCAGCATCAGCGCGCAAGC 135999 29 96.6 32 ............................G GGAGATTGGGCCCCGCCATGTCAGTCCCAGTT 136060 29 100.0 32 ............................. ACGTCTCGGGTCATGAAGTCGTACTGGCCCTT 136121 29 100.0 32 ............................. AGGCCCCGGTGCGCCGCGCGTTGCCGGGCCTT 136182 29 96.6 32 ...C......................... GACTACTGGTGCAAGGGCCTGTCCTTCGGCCC 136243 29 96.6 32 ...C......................... CGCACCCTGCGGCAGGGCCAGCGAACCGACCT 136304 29 96.6 32 ...T......................... GGGGCGGAGCCGTAGCCGTAGCCGGACGCGGC 136365 29 93.1 32 ...C..........G.............. GTGGCGGCCTCGCGCTCGTCGGCGGTGGCGCG 136426 29 89.7 32 ...C.............T...C....... CGCACTTCGAGCGCTGGAGATCCCAAGTCGTA 136487 29 89.7 32 ...C........T............C... GCCGCCTGCGCACTGGCCGAGGGCACGACGGT 136548 29 93.1 32 ...C.................A....... ATTACGTCCGGTGGACTCGGAAACCGGCCCCG 136609 29 93.1 0 ...C................A........ | ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.1 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ACATCGCCGCCGGTGAACAGGTACGGTGGCTGCCCCGCCGTCAGGCATCCGACATCCCTCTGCCCGGTAACGACTTCTGGCTGTTCGATGACCGTCTCGTCCGGTGGAACCACTTCGGCGGCGACGGCTCCTCGCAAGGGCCGGAGCACACTACCGACTCGACGGCCGTGAAGCTGTGCGGGAAAGCATTCGAAGCCGTGTGGGATCGCGGCATACCGCACGACCAGTACGACATCCGCTGACAACCGCCCCCGGACGCCCCCCCTTCTCAGCGCCAACGAGAGCGCCGCCGACGCCTGGAAGGCTCCGACCTAGGATCCGGTCGCGGCTGCACCTCTTCACAGAAGCCGCAAGAAGCCCTCCCCCGCAATGAGGGACGTGCAGAATAGCTTCTGTCGAGCATCAAGCAGGCCGATTCACCCCGAAGGTCCCGCATGACCGTTTCTCAAGAAGTTAGCAAAAACGGGCCTACGGCCACCTAAACCCGCAGGTCACGAACA # Right flank : CCACGGGCTCACCCCGCCCGGCATCCTCGCGGCGGTGCTACCTGCGCGCGGGGGCGACCCCTCCACACCCCCGCCCGACTCCACCCAGCCGGGCGCCCCTCCCCCCCATCGCGATACGTACACCCACGCCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAACCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGCGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAACGGGACCTGCTCAAAGAACTGGGCCGCAGGCACCGTCAGCGC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1305-2434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFA01000030.1 Streptomyces californicus strain NRRL B-2895 contig30.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1305 30 96.7 31 .G............................ GGTCCGCCAGGAACCCGTCCGTGGACACGTA 1366 30 96.7 31 .............................C GAGGAGATCCCGATGGGAAAGACCGTCTGCT 1427 30 96.7 31 .............................G CTCGCAGGTCGTCATCCTGGTACCAGTCGCC 1488 30 100.0 31 .............................. TGAGCCGGAAGTCCGACTCGGAGTAGGCGAG 1549 30 96.7 31 .............................C GAGCCAAGGTAGTGCAGAGCTTTTACTCGGA 1610 30 100.0 31 .............................. CGCACGGCGGCTACTACTTCGGCCGCCCCAA 1671 30 93.3 31 ............................AC GGCGGGACCGATCGTTCCCCCCAGCGCGTCG 1732 30 100.0 31 .............................. GCCTGTCCAGGCGGTCCGCCAAAGCCACGGA 1793 30 100.0 31 .............................. TGTCTACACCGGAGAGGTGTGTCTGTTTTAC 1854 30 96.7 31 .............................G CCGCATCCAGGCACCCCCGGGCACCGTCTTC 1915 30 96.7 31 .............................C CAGCGGACGTGATCCGCGACGGAGTTGGTGG 1976 30 96.7 31 .............................T GCACGGCGCAACAACACTCGCCGAACACCTG 2037 30 96.7 31 .............................G GTGACCGGATGACCGACGACATGATTGACCG 2098 30 93.3 31 ............................AC CGGGGCAAAGCGAAAGGCAGGCGATCCGGTG 2159 30 93.3 31 ...........C.................C GCACCCCCAGCATCGTCTCCATGTGCGCGTC 2220 30 100.0 31 .............................. TCAGCGGCAGGGACTCGGGCAGGGTGTACGT 2281 30 93.3 32 ............................GT GTGGGCGCAGCCCCACTATCTGTGCGTAATGA 2343 30 93.3 31 .........................C...G GCGGCAGTGATCGGCGTACCTGTACGCCGCT 2404 30 73.3 0 ...........CGGT......C....TT.G | T [2414] ========== ====== ====== ====== ============================== ================================ ================== 19 30 95.4 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CCGACAAAATCCCACCCCACATCCCCGGAGAGGCCGAAACCCGATCACCGAGCACCGCCAAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCGGAAGCCCTCCCTGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGGCAGAACCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCTGTGGTACGCAGAATGGCACCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGGG # Right flank : GCGGGTGTTCGCGGTGCCGCTTCGGTCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGGCACCGGGCCGCCCCGCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCTCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81579-81424 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFA01000036.1 Streptomyces californicus strain NRRL B-2895 contig36.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 81578 33 100.0 28 ................................. GCGCACGGGCATAGCTCGCTCTCGGGGA 81517 33 84.8 28 ..............G..............TTTC CGGCTGGGCTCGCCCCGGGCCGCAAGGC 81456 33 87.9 0 .............................GACG | ========== ====== ====== ====== ================================= ============================ ================== 3 33 90.9 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGAA # Left flank : ACCAAAGCCGACGAACCTGCCAAGCCGCCCCTGCGCCAGCGCATCGCCACCCGCTGGGACAACCTCAACCCCACCACGAAGGCCATCATGGTCACCGGCCTTACCGTCGTGGCCGCAGGAGTCGTCCGTGCCGTCGCAGGTGGGCGTGCACCCGCAGACGAGCCCGCCCACCCGATCGAGACCGAAGAGAACACCAGGCAAGGGCGCTACGACCACCTTGGCCGCCACGTCCAGTTGAACAACCACGGCTACTACTACATGTGCCAGCACTACGCATGCTCCAAGAAGGTCAACTGGACCATCCCGGGTCACGACTGTTGCGGGCGGTGCACCCCCGGCCGGAACTGCCTCAAGGAAGCGCAACGCGACTACGCCGGCCCTGGCACTCATGCGCACGAGTTCTGGGAAACGTTCATGAACCCCGGTGTTTGCGCCACGTGCGGCGAACTGCCCGAGGTGCACCCGAAGCCCTAGCAGTCCAGCCTGCTCGCCCCCTGCCC # Right flank : CACCGATGAACCCGGAGCAGCGCTCCAAGTCCGGGCGCGACCGCCGAGGTGATGCTGGTCAGCCTGTCCCGTTCGCCTGAGAGGCGTTGCAAGGCTACTCCGGGAGTGCCATGTCGAGGCCAGGTCGGTTGCTGGGCGGCCATCTTGGCGCATAGCTCCTTGAGGGCTTGGCGGCCGTCGGCGAAGCGCTCCTCAGGTTCCCCAATCGTTCGCGGAGCTACCGTTCGGCGGCGGCCTGGATCATCGGGTTGGTGTGCTGCTGCCTGGTCCAGGTGGCGCGGTGGGCGGCGATGACTTCGCGGTAGCCCTCCGGCGGATCCGCACGCCGCATCGGCGCTGCGGGTGCGGTCAAAGTGGGGACGGTTCGGCGGCCGCCGTGGCGGGGGCGGCGACCTTTACAGGTGCGGGCGCCAGGACGTTCGCGGCGGGCACCTTCTCTTTGGCCGCCGCAATCAGCTTCGGCGCGCTCCAGCGCAGCTGCGTTGCGGCTCCCGGAAGGC # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 375-780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFA01000051.1 Streptomyces californicus strain NRRL B-2895 contig51.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 375 30 100.0 31 .............................. CAACTCTCTCCTCCTCCGCCCACTGCCCCGC 436 30 96.7 31 .............................G CATGATGATCGGCTCGTGGGCCTCCGCGACG 497 30 96.7 31 .............................A CTCTGAACCCGCGCTGCTCCGCGAACTCCCG 558 30 100.0 41 .............................. GCAGGACGCGATCTGGCAGAAGGCCCTCGACGGCGACCTCG 629 30 93.3 31 .........A...................C TGCGGGTGTTCCTCGACAGCCGGGACGCGGG 690 30 93.3 31 ...C.........................G GGGTTGAGGTCGAGGGCCTGGAGGAACTGGA 751 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ========================================= ================== 7 30 96.7 33 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CCACCACGCACACACTCACGGCGGCGACCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGTATAACCCCCGCCCCAAGAACCCCCGTTAGGCAGAACAGACACACCGCATCCCCAGGACCAGCCCCACAGACAGAGAGCAGAACCGCAGCCCTCCCGCCGAAGCCAGGCCCAGATGAGACCGGCGGCGGGCAGAATGAGCATCAGCCGAACCACACGTGACCACTTTGCAACGGAAGGCGAGATATGCTGGTTTCCCAAGAAGTGAGTAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGGCACGAAGGTGGTCCCCGCTCACGCAGGGG # Right flank : TCGAGCCACCCGACGCACCTGCCTCCGGCCCGGGAGCGTCCAGGTGCGGCCTCGCCCGAGGCCGCCACCCCCGACCCCGGAGCACCGCCCCTACGCTTCCGACGTCCCCGACACCGCCACCCGGAACCCCACCCCGATCGCCGCCAGGTCCTCCTCGTACGCGCCGTGGCGGCGGGCGCAGCGGGCCAGGTCGCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGGGGTCGAAGGCCCAGTCCTCGGTCTCCGGGACCTCGGCGGGCGCGCCCGGATACGGAGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAACGAGCCGACCGGCGTCGTCGTGCCGACGCCCAGGTCCACCAGGTTGGCCAGGCCCGTGCGGTACTCCTCGCCCCACGGGAACTCCCTGCCGTCGTCGCCGCGTGCGGCACGTTCCCATTCGTCCTCGGTGGGCAGGC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 78634-78907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFA01000007.1 Streptomyces californicus strain NRRL B-2895 contig7.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 78634 30 100.0 31 .............................. TCGGGTTGCGCAGCATCCGGGTAATGACAGC 78695 30 96.7 31 .............................C GGTGGATCACCATGAGGTTGGCGATGCCGAG 78756 30 96.7 31 ............C................. CGCCGTTCTCCTCCTTGAGGGTTCCGGCGAT 78817 30 86.7 31 ...........TGG...............A GCAGGGGCAGGAAGTCCGGGACTGCGTCGCC 78878 30 70.0 0 ..............GC.T....CT..GAAT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 90.0 31 GTGGTCCCCGCGTACGCGGGGGTGGTCCCG # Left flank : CCGACAAGATCCCGCCCTGCCTCCCCGAGGCGGTGGAAGTCCGTTCGCCGGGCGCCACGGAACCGATCTACGAAACCCTCGTCGAATGCACCAACTGCCGCCGCCCAGGCCCATCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGTCACCGCGCCCACACCACGGGCGGCAACGACACCGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACCCCCTCGTCGGGCAGGCCGGGCTTACCGCAGCCCCGGGGCCCACGCCTGCGAAAGGCCTGACCACAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGTGACCACTCTGCGGCAGGAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCGAGCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCCGCTCCTCAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGATGTGTTCCTCGTCGTTCTGGAGGGCGGGGGCAGGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGATCCCGACCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGCAGTGAGCCG # Questionable array : NO Score: 3.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22769-22398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFA01000040.1 Streptomyces californicus strain NRRL B-2895 contig40.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================== ================== 22768 28 63.3 0 AAACC....AG.....AA...-.......- - T [22758] Deletion [22741] 22739 23 73.3 0 ------.....................T.- - Deletion [22717] 22721 24 80.0 31 ------........................ GCTGCACGCCGACGAGGGGAACTCGTGGTCA 22666 30 96.7 31 .............................G GCACCCGGTTGAACGCGTCGTGGGTGAAGAT 22605 30 100.0 31 .............................. GCGACCCACAGAGCTGGGCCCGGCTCGGCCA 22544 30 96.7 84 .............................A GGTCGACGCACTGGAAGTAGCTGGGGTACGTCGTGGCCCCCAGCACGCGGATTCCCCCCGCCCCAGCGGACGGCCACAGGCAGG 22430 30 83.3 0 .C..G.......T......T..A....... | G,C,C [22401,22403,22418] ========== ====== ====== ====== ============================== ==================================================================================== ================== 7 30 84.8 30 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CGGCAGGCGCGGCCAGCCGGCGAGAGCTGGCCTTCTTGCATGACCGCACGCGCGTCAATGAAGGCCGCAAGCAGACCTACGGCACACAGATCGCCGGCGTGAAGGACGGGGCACCAGTCCCGTGGCCTTGCGACGAGCCGGAACGCATGGACGAACTCCGCGCCAAAGTCGGCATCGAACCCTTCGACGAGTACGTTGCCAAGTTCTCAGTTGCCTGACGCCGACCCCGTCCGGCGGGTCCTGCCCTGGGGCTCACCAGCCATAAGCATGATCCCCCGGACGGGACCTCCACCGAGCCCCTCGTGAGGTGCAACAAACGCACCACACCCCGGGGCCAACGCCTACGGCGGACAGAGCCTCACTTCTTCCATCGAAGCTGAGCCGGCGAAGCTGGCGGCGGGCAGAATGGCACCAGCCGAACCACACGTGACCGCTCTGCGACGGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCCACCACCT # Right flank : TCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCGCCGCGCCCAGCGGACTACGTCGCAGGTGCCGGTTGGCCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGTACCGCAGGGCATGACGTCCTCCTCGGATCGCGCCGCCCGCAGGAGCGGGGTGACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGACGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCGACGTCGGGGTCGGCCTCTCCGACGACTTCAGCGCCCTCACCCACCCCAACAGCAGCCTGGGCGAACTGATCCAGGAGGCGTTCCCGCTGACCCCCGTCGTCAAGACGCTCTGCACGAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.25, 5:0, 6:0.25, 7:-1.34, 8:0.6, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24244-23907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFA01000040.1 Streptomyces californicus strain NRRL B-2895 contig40.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 24243 30 93.3 30 ............................TC GACTTCGATACTCCACGTCTGAGGCATTAT G [24220] 24182 30 86.7 32 ......................G..GT..C AGCACGTGCGGCTCACGTGGGTGACGTTGCAG 24120 30 90.0 31 ........A................C...C AGATCTCCCTGGGCCGGGCCACCGTCGCGTT 24059 30 93.3 32 ........T....................A TGACCGCGCCGTACTTCAAGGTGGTGCGCGGC 23997 30 100.0 31 .............................. GCTGGTTGCGGGTGAGTGTGGGGACGTCGGT 23936 30 93.3 0 ...G......................T... | ========== ====== ====== ====== ============================== ================================ ================== 6 30 92.8 31 GTGTTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : ACTGACAAGATCCCGCCCTGCCTCCCCACAACGGCAGAAGTCGACTCGCCGGGCGCCACGGAACCCGCCCACGAAACCCTCGTCGAGTGCACCAACTGCCGCCGCCCAGGCCCACCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGCGGCAACGACACTGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAGCCCGTCTAGCTCCCCGACCACCACACCCCTCGTCGGGCAGGCCGGGCTCACCGCACCCCCGGGCCACGCCTACGAAAGACAGAGCCGTACCTCTTGCGCCGAAGCCGGCCCGACCAGGCTGGCGGCGGGCAGAATGGCACCAGCCGAACCACACGTGACCACTCTGCGGCAGAAGGTGAGATATGTCGGATTCTCGAGAAGTAGGCAAAAGCCGCCTTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGTCTCCAAATCGAGGAGCCTGCGGACCGGCCAACGCAGTCGGGCGCAGTGAGTACGGTCGCCCTACCTGCTTCGATACGGAAATCTACAAGCCCCGCAACGAAGTTGAGCTGACGGTCAACGACCTCAACTGGCTCCGTTCGGTGGCTGCGCGATGCGACTAGCGCGCCTACGTCTTCCAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGGCTTCGGGGGTAGATCCATTATCGCGCTCCGCGGAGGCGCTTGTCACCGTTCTCCGGAATGATCTTTACGCCCGTTATGCGCTCATAGGGTTACGGGGATCGAGCACGACATACCAACCTGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTGACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCAAGCCAACAGCGATGATGTTGCTGAGCAGTTGGCATGGCACCGGCTTACCGCGCAGCACGGTGACCGGCTCGGTCAGA # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 30262-29172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFA01000040.1 Streptomyces californicus strain NRRL B-2895 contig40.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 30261 30 96.7 31 ..............T............... CGTCTGCTTCGACCCGTCCGGGTGGATCGGT 30200 30 93.3 31 ..............T..............A AGGCCGGCGGCGCAGTCGGCGGAACGGAGTA 30139 30 93.3 31 ..............T..............C CGACGCCGCCAGCACCCTCCTGGAGCGCACC 30078 30 96.7 31 .............................A TGCTGTTGAGCTGGTCGCGGATCTCCTGGTT 30017 30 96.7 31 .............................C GGCCGCCCGTCGTGGCGCCGCTGGTGCGGCG 29956 30 100.0 31 .............................. CGTCCGAGCCCAGCAGGGCGAGGAGGTCGTG 29895 30 100.0 31 .............................. TCCGCGTCAAGGCGTCAACTTGGTTCGCGGT 29834 30 93.3 31 ............................TC TGTCCCCCTTCCCTGTCCTCAGGCCCCGTAC 29773 30 96.7 31 .............................G CGGCGGCGTTCGTGAAGTCGAGCCACCCGAG 29712 30 100.0 32 .............................. CTCCGTCTCCACCAGCCTGCTGGAGAAGTTTG 29650 30 96.7 31 ............................A. CTCTGGAGTCCGGCATCTCAACCGTCATGAT 29589 30 100.0 17 .............................. GGTGCACGCAGAAACTT Deletion [29543] 29528 30 96.7 15 .............................C GCGCACGCGGGGGTG Deletion [29484] 29507 30 96.7 32 .............................C CCCCATCACAGCCGGTCGCCGGGGCTCAACCT 29445 30 96.7 31 .............................G GAGTCGGCACTGTCCGCAGTGCTCACCCTCG 29384 30 90.0 31 .......T.................G...G TGCCCGTGGGCCACTGCTCATCGAGCAGCGC 29323 30 93.3 31 .........A...................A GGCGCTCCTGCGTCCACCCGGTGACCTTCGG 29262 30 96.7 31 .............................G TGTACGTGGCGTCGCCGGCGCGGTCGAGGCT 29201 30 76.7 0 .G....................CCCAG.G. | ========== ====== ====== ====== ============================== ================================ ================== 19 30 95.3 30 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGATATATGCCGGTTTCTCAACAAGTTAGTAAAAACCACCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : GAATGGTCGCGCAGCTCGCACCGTAGCCCGGACGAGGAACAGCCCACCGGGTCAGGACGTTTGGCCGTCGCCCTCGACGTCGTCTTCCCCTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGCGATGTGAAAGCTGTGACTGCCGGGGTGGTCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGCGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACGCGATGGCCACCCGCACTCGTCGCCCACAGGAACCACAGACTCACGGGCGGTTCGGTCTCCGCGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGTGCGGGAGGTTGGTGATGGCGGTGCATTGCAGCACGGGGGCGAAGGTCCCTCTCGTGGAAGTCCGTGGAGGTCTGCGGAGCCTGGATCGGATCGTGCGGAGTCCCGCAGGC # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 34272-33755 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFA01000040.1 Streptomyces californicus strain NRRL B-2895 contig40.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 34271 30 96.7 31 .............................C CGCGGGCCTCCGCGTCCACGGCGAGAGTGAG 34210 30 96.7 31 ...A.......................... CCATCAGCGGCACCCACGCGGGGCGCTGAGT 34149 30 93.3 31 ...A.........................T CGCGGCGGTCATCGGGTTGCTGGGTCATGCG 34088 30 96.7 31 .............................A GCGGCTTCGCGCTCGAATTGGGGGCGGAGGT 34027 30 100.0 31 .............................. GCACCACACCGCTGGCCGCTCTGGCCGCCGG 33966 30 100.0 90 .............................. CGTACGCCTGGCTCCAGCTGGAGGGCTACGTGTGGCCCCCGCGCGCGGGGGTGGCCCTCAGGCGAACCGGAATTCGGTCTGCCCCGGCTT 33846 30 90.0 32 ...........A.............C...T CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 33784 30 80.0 0 ......................CCAG.GT. | ========== ====== ====== ====== ============================== ========================================================================================== ================== 8 30 94.2 40 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCAGCGCCTCCAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGGCCTCTGAAAGTCAACCGACGACGGTCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGAAGACCGCCATACCGGCCCCGAAGGAATAGCCGCACCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCAAGATATGTCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGACACCTAACCCGCAGGTCACGAACA # Right flank : AATGGTCGCGCGGCCCGCACCGTAGCCCGGACAAGAAACAGCCCTACAGGTCAGGACGTTAGGTCGTCTCCCTCAACGTCGCTTCCCCCTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTAATGTGGAAGCTGTGGCTGCCGGGGTGGCCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACGCGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCACGGGCGGCTCCGTCTCCGCAGTCCACAGACGGGCGGCGTGCTCGGTGGTCTCGCCGTGCTCGCCCAACTCGCACAGCACGTACGGCTTTTCTTCGAGGAGGTCTTCGGCGTCGTCCGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGGGCGGGAGGTTGGTGATGGCGGTGCATTGCAG # Questionable array : NO Score: 4.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.69, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //