Array 1 250940-248989 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHYB010000076.1 Yersinia intermedia isolate IP39994, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 250939 28 100.0 32 ............................ TCGTCAGGATCGGCCTTGACTGTTTCCACTGC 250879 28 100.0 32 ............................ ATGATGGGATTAGCACTTCCGAATCAATAACC 250819 28 100.0 32 ............................ TAGCGAGCATGCCGCTAATACTTCTATCCCGA 250759 28 100.0 32 ............................ ACATGCGACGAGCTTAAAAATGCGTCGCTTGA 250699 28 100.0 32 ............................ AACATAACCGTTGACGTTCATTGCTACCCAAT 250639 28 100.0 33 ............................ ACTTCGAAATAAACTCGCTTAAACGCCGCTTAT 250578 28 100.0 32 ............................ AGTTGCACAAATCGTTCACCGCCAGGCGGTGA 250518 28 100.0 32 ............................ TCTCTAAGCGCTTTAAACGCCCAATCACTGAA 250458 28 100.0 32 ............................ GTGACGATTTAACACACCAATAATTAACTCCC 250398 28 100.0 32 ............................ AAGGAGAAACACAATGTATCAGATAACAAACG 250338 28 100.0 32 ............................ ATAAGGCGCTTCACCTAATGCTTAATAACTCT 250278 28 100.0 32 ............................ TGGTTTGATAATGACAACCTCAACACTTTCCT 250218 28 100.0 32 ............................ TTAATCCAGCTAATGCCTCGCAGAAGCCGGTT 250158 28 100.0 32 ............................ TTCGACTATTAGAAGCTCGCTAATCACAGCCA 250098 28 100.0 32 ............................ TCATCATTTAATAAGCTACTCAACTCAAATTA 250038 28 100.0 32 ............................ AGAAGATTGTGCACAGAAATGTGTAGCCGCTA 249978 28 100.0 32 ............................ GACAGTAAACCCGCTCAGTCCCTTAATTTTGT 249918 28 100.0 32 ............................ TGCGGAAAGCCCATGAAGAGTTCATAGCCAAT 249858 28 100.0 32 ............................ AATGGCTGACAAATACCAGCGCACAGCCGCCT 249798 28 100.0 33 ............................ CTGTTCATGGGATATTGGTTCCGCGCCGTGGGC 249737 28 100.0 32 ............................ GAGAGTTGCCGCAATTCATGCTGAATTAACGG 249677 28 100.0 32 ............................ TGCGCCACTACGAAAAGCTAAAGCCACTTGGC 249617 28 100.0 32 ............................ ACAGCAGGGCGCGGGGAATTGTGGGTGCGGTT 249557 28 100.0 32 ............................ TTCACGTCATTGGCGTATTTCTTTACCGTTGA 249497 28 100.0 32 ............................ ACCGGATAACCATGCGGCAGAATAGCCCCCAG 249437 28 100.0 33 ............................ AACGAAAAGGATAGGGCGGTTTCGTTCACTGTA 249376 28 100.0 32 ............................ ACAGAGATTGCTTCAGGGTTGGTCTCGGCTGT 249316 28 100.0 32 ............................ AGTGCGTCAACCAAGGCTTCGCGGGAAAAATA 249256 28 100.0 32 ............................ AACATCATAGCCTACACCGAAACCAGACTGAT 249196 28 100.0 32 ............................ ACCGGCGACCAAGGTTATAAAATCGGGAATTC 249136 28 100.0 32 ............................ CGACTGGATGAGGACGGTTGGCAGAAGCTAAA 249076 28 100.0 32 ............................ AAACATCGGTATATGGCACATCAGCAGTAACG 249016 28 89.3 0 .....................G..A.T. | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.7 32 GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Left flank : CGCAAGACATCGATAATTTGATGCAGCAAAACTGGTTACAAGGTATGCGTGACTACGTTCGATGCAGTGCGGTATTGCCGGTGCCTGAGGCAGTACAATACCGAACGGTGAGGCGAGTACAGGCAAAAAGCGCCCATAACAAGCGGCAGAGATCGATTGCTAAAGGGTGGCTAACTGAACAGCAGGCGTTTGAACAAATACCCGACACCCAACAGAAATCTCTCAGGTTGCCTTTTATTCAACTGCGTAGCCTTTCGAACGGCAATACGATGCGAATTTATATTCAGCATGGCGAATTGCAGGAACAAGCTCAGTTGGGAAGTTTCTCTGCCTATGGTCTAAGTAGCAGTACCACCATACCCTGGTTTTAACCCTTTTTTTTCGGCTATTGCTAACTGATTGTTTTGTAATGGTGTAATGAGAGGGTGAGAAAAAAGGGTTTCTCAGTCAATATCCTGATTTATGTTTAATAAACAGGGTGATGGCATATTTTTATTACC # Right flank : GCCTGGGCACTGACGGCACGGCAACAGACGTTCCATGCCTAAAGCCAACGAGGATAATAATTTTAAACAGCCAATTATCTAGTTTTGCGAATACTGATTATTGATGATATGAACGGCCAACTGGCCTGTTGAAGAACCTGTAAAACGGAAAGGCTCATCTGAAGCCGTATATTTTCTAGAGGTTCATCAGGCCAGAACTCATCAGAGTGCGGGCAATTAAGCTCATTCAGACGCCGGATAGATTCAAGCAAGCCAACAATATCTTCAAAATCAGTGTTGCAAAAACGGGAGTGACTATAGATTCCGTTTTCCAAGCGGACCCGTTTATCACCAGTGGAACCATTTTATTTGTTGGCTACCTAAAAATGTGGCCACGAAATTTTGCTAACTTTCCTATCCTAATGCGACAGAACCCACTGATCGCCATCACCATCAACTTACCAATATTTGTTTATCTCACAACGCAGTGCTTCTGCGGTTGCCTGTCCGCTTTCAGAGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //