Array 1 5425-6041 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOVE01000084.1 Prevotella sp. 885 NODE_84_length_6155_cov_20.5754, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 5425 30 100.0 34 .............................. TACAACAGTGGGGAAAGTTGAGAACCTACGGCGG 5489 30 100.0 34 .............................. TACAACGAAAGACAATGAAAAAGATTCCTAACCA 5553 30 100.0 36 .............................. TACAACCCGGGCTACTGCAATCTGTATAGCCGTGCA 5619 30 100.0 35 .............................. TACAACGCGCAGGTAACATTATCTTTCAGGCAAAG 5684 30 100.0 35 .............................. TACAACCAAAGTTTCGATGAACTTCTAACCGCTGG 5749 30 100.0 36 .............................. TACAACAAATCTAAGAATCTACTTAGATGAGAAGTA 5815 30 100.0 36 .............................. TACAACTCTTATTACCTCATGCCACAGCGTGCAGGT 5881 30 100.0 35 .............................. TACAACCATGAGATTAAAGTAAGAATTAAGTTTAA 5946 30 100.0 35 .............................. TACAACGTTTTCCACAAGGAAACAGATAAGATGTG 6011 30 80.0 0 ...................T.GGC....AT | T [6029] ========== ====== ====== ====== ============================== ==================================== ================== 10 30 98.0 35 GTTGTGGTTTGATGTAGGAATCAAAAGATA # Left flank : GTATTATGCTGGTGAAATTAAGAAAATATCACTTCCCTTTATCTTATGACAGAATACAGACTTAATGCATATCATATTATGTGGTTATTTGTGTTTTTCGATTTGCCGGTTTCTACCAAAAAAGAAATGAAGGCAGCTGCACTTTTCCGTAAGAATTTGGAAAAAGACGGCTTTTCCATGATGCAGTTTTCTGTTTATATACGGCATTGTGCATCAAGAGAAAGTTTGGATGTGCATGTGAAAAGAGTGAAGGCTTTATTGCCAGAAACAGGAAAGGTTAGCATACTAAGTGTTACAGACAAGCAATATGGGGACATCTATAATTTCTGGGGCAAACCAAAGAGTATTAAAAAGAGTAAAATCACTCAGAAAGTTATAGGTACACCAATCCAATTGGAATTTTTTTAATACTTTTGTAGCATAATAATTCTTACACGGCGATTTCTTATAACAAAACAAGAACTATAATATACTGGTTCTCTGATATTTAGAAGTTATAG # Right flank : GTCACAATCTACCCGTTCGCATACATAGAGGACGACGTGGTTATCGGCGATGACTGCATCATCTTCCCCTACGTGAGCATCATGAAGGGCACCGTTATGGGTCGTGGCAACAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGAATCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 4723-4235 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOVE01000094.1 Prevotella sp. 885 NODE_94_length_4755_cov_51.5719, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4722 30 100.0 35 .............................. TACAACCGCTATTGGGCAACATGCAACCGCTGAAG 4657 30 100.0 35 .............................. TACAACGGAACATGATAATCATCATAGGTAAATAG 4592 30 96.7 35 ..........A................... TACAACCTTAAAAGAGGCTATCCTTAACAACGCCA 4527 30 100.0 35 .............................. TACAACACCTCGTCGAAGGCACAGAGTCTATCAAC 4462 30 96.7 36 ..............C............... TACAGCAAGGGCAAAGAAATAGCCGTAGTGTTGGTA 4396 30 100.0 36 .............................. TACAACTATGACAACATTCGGTAAAATCACAGAACA 4330 30 96.7 36 ......A....................... TACAACGAGGGGAATATCCGTCCGCGTACTGTCACG 4264 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 98.8 36 GTTGTGGTTTGATGTAGGAATCAAAAGATA # Left flank : CAACCGATGGCAAACCGCCGTGTGCAGTTCGA # Right flank : CCCCAGTTCGGGATAAGAAATAGTTTATAAAAAAGTTGGTAGTCTTATAAGTATTTTGTACCTTTATAGGTGAAAATCAATTAGTTATAAAAATATTTAATATGACTACCGATTACAAAGTGACAGAATTATTTTGTATTATAGACGAGTATTGCAAACATTTTGATGCAGAAAATGCAGGAAATTTGCTGGAAGACAATAGCGGAGTGAAGCGTAGACGGCGTGCAGCATCGTTGTCCGACAGTGAAATCATGACTATTCTGTTTAATCTCTTTCGATTCTTTATATATAGCCCATGTCTGATGGCATGGGAAGAGAATTCGTGTATCTGTCTTCATATGCAACTAATCGCTATTTTATCCCGAATTGGGGTACTAAAATATAAGCAAAGCTGAACAATGCAATATACTCGAATGTATCAAGTATGTATATCAATGCTTTAACGTCTTCAATATGATCTGATAATATGGGCTTGCCATGTTCTGTTTTTACGAAAAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGAATCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 52924-53480 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOVE01000019.1 Prevotella sp. 885 NODE_19_length_53508_cov_80.106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 52924 33 97.0 32 ................................A GCTCTGGTAATGGCGACTTGTAACGGCTCTCG 52989 33 100.0 33 ................................. GCTTCATCATATTGCGATTGCCCTGCACAATGG 53055 33 100.0 32 ................................. CTCCTCTGTCAATGACAGAACACGTTGTGCAT 53120 33 100.0 33 ................................. CCTGCTGCAAGGTTGTGACATTGCTCTCGATTG 53186 33 100.0 32 ................................. CCAATGTAGCTTTGGTGCAAGCGTTTACTCTT 53251 33 97.0 34 ................................C CAACTCGTCCATTGCCGTTTGCTCTGCGGCTCGT 53318 33 100.0 33 ................................. GAAATAAAAGCAAATGCTTTATAAATAAAAAGC 53384 33 97.0 31 ................................A TACTATAAATGATTAATAAGTGTTTAGAAAC 53448 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ================================== ================== 9 33 98.7 33 GTCGCACCCTACGTGGGTGCGTGGATTGAAACT # Left flank : GACGATTATCCCGTATTTTTAATCAAATAGCTTATGTTCGTACTGATTACCTATGACGTGAATATCACATCCCTGAACGGAGCCAAGCGTTTGCGCAATGTTGCAAAAGCCTGCCTAAATCATGGGAAGAGAGTTCAAAACTCAGTATTTGAATGCGTCTTGACCGAATCGCAATATATTATGCTTAAAAGTCAATTAGAGAACATTATTGACTCATCGCAAGACAGCATCAGATTCTATCTATTAGGCTCAAACTGGAAACGTAAAGTGGAGACTATCGGCAAGAATATGGGGATAGACGTCACTGGAGAACTGATAATCTGATATAAAGGGTGCGAACGTATAGTATTGCATAATATACAGCGACTTTCGCACTCTTTGAAAATCAAATAGATAGATTTATATACCCATAAGATTCACATAAGTATTCAAAAATTTGCATATTATTCGCAAATAATGTACTTTTGTAATATGATATTCAGACATTTGCTGAATATGCG # Right flank : CACTTAACCGCCAGGTAAAGCCCGCCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGTGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18737-18506 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOVE01000058.1 Prevotella sp. 885 NODE_58_length_18774_cov_94.238, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 18736 33 100.0 33 ................................. CTCGTCGGGTGCAGGGCTAACAAGTCTGTCGTA 18670 33 93.9 33 ............T...................A AAGATGTTCGCATCATCCGACCTTGTGCCAGAC 18604 33 93.9 33 ........T.......................T ACTTCTTTGCTGTCAACTCTATACACCTCGTTT 18538 33 93.9 0 ............A..........A......... | ========== ====== ====== ====== ================================= ================================= ================== 4 33 95.4 33 GTCGCACCCTACGTGGGTGCGTGGATTGAAACG # Left flank : GAAACAAGGCTGACACGGGATTCATTCCCTTCTCCAT # Right flank : TATTCGCATAACCGAAACCCGCATTCGTACCATGTTTTACTAATAGTGACACATAGATTAAAACAATACAAACCAGAAATGTGTAAGCCACAAATGATATGTATTGGATCTTATCGTTGCTGTCTGTAATAATATAGAATTGCCTATAAAGAAAATTGCCATTAAGTTATACGATACTTAATGGCAATTTTTTTATCACTTGTCTGCTTTACGCATAAGGTAGCCGGCGAATATTCTGGCGGCACTCTCCACCTTGGCGGCGCAGGGACGCTTCTTGTAGTATTCGGCGGTGCGTGGTGAGGCGACGTAGGAAGAGTGGGCTTTCTCGTAACCGTTAAGTCCGAGAAGCTCGGCGCAGATGAGGGAGCCGTTCTGGGCTTCCGACTCATGGAGCAACTCCTGCACCACCTTATAACATGCCGACTTGCCCTCACGGTCAGCACCTTCCGTCTGACCGCAGTCGAGTCCGACGAGGGTGACGATGCCGGAGACGGCACCAC # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGTGGGTGCGTGGATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //