Array 1 48172-48993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXMY010000001.1 Proteus mirabilis strain SCSZC22FQ NODE_1_length_530798_cov_117.183567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48172 29 100.0 32 ............................. GTAAAAAATAATGTGGAAGCCCCTTAAAAATT 48233 29 100.0 32 ............................. CAAGTAAACAAATGTGTGCTATGTTAAACGCA 48294 29 100.0 32 ............................. GGTTATATTCAACTTGAACACTTTTATATAAG 48355 29 100.0 32 ............................. CCAGCCGTAAATAATGTGTAGTAGAATGAGGC 48416 29 100.0 32 ............................. GGGATAGGACTCGAACCCTATGTTCCGATACC 48477 29 100.0 32 ............................. AAACAGGCGCTAGTGATGCAATGCAAGCACTG 48538 29 100.0 32 ............................. ACAAACTGTAGCTCAGGATGTGGTATTAGGAG 48599 29 100.0 32 ............................. TTACTATTAACGCCGTATATTCAAAAAGAATT 48660 29 100.0 32 ............................. GTTTTATCGTATCTGGTGCTACTGCGCAGGAA 48721 29 100.0 32 ............................. TGATTAACCCTATTTATCATCAATTAGGAGAG 48782 29 100.0 32 ............................. GCCAGATTAATCGGTGCGGGTACACCACCTGT 48843 29 96.6 32 T............................ GTGAGTTTTTGGCTCGAAAGATAGCTATGAGA 48904 29 100.0 32 ............................. CCATCAAGTGATTTGAAATGAATTTATTAAAT 48965 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : CCCCAATGCAAAACCTGCGCTTGATTGTCCCGTCGTATTTCCTTATGCGCCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGGGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGTGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATATTACCGACGTTGGTATTACTTATTAGTGGAATTTTAATAAATGCTCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA # Right flank : GATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAATTTTGAAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCAAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTAGTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATATTGGCAAATTTTCTTCTTCATTTCAATATATTAATCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57881-58641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXMY010000001.1 Proteus mirabilis strain SCSZC22FQ NODE_1_length_530798_cov_117.183567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57881 29 100.0 32 ............................. TTTTAGTGTTTCTTCTGTATTTAATTTAAAAT 57942 29 100.0 32 ............................. AAATCGCTACAGATGTTATTGAGGGTGAGCAA 58003 29 100.0 32 ............................. CGACAGGACGTTACAGCCCTAACTATACACCA 58064 29 100.0 32 ............................. CTTTATCAAGTGACGCTTGAGCGACTTTTAAT 58125 29 100.0 32 ............................. CCAGCAAACAAATGTGTGCTATGTTGAATTCA 58186 29 96.6 32 ............................T ATCAGAAAACAATTGATTCATTAACTGCAAGT 58247 29 100.0 32 ............................. CACATCGTCCAATTTCTCAATAGTAAAAAAGT 58308 29 100.0 32 ............................. GATTTAGCCGATTGAATAACGGCTTTCGTCGC 58369 29 100.0 32 ............................. GACAAAAACTTTGCTATCATCACGCCAAAAGA 58430 29 96.6 32 ............C................ CGGTCGCCAGTTGTGAAGGCTACGTATTAGTG 58491 29 96.6 32 ............C................ GCAGTAAACCAATTCATATTATTTGGATCTTT 58552 29 96.6 32 ............C................ TTATCCACGGCTTTAAAAAGTCGAGCAGGATT 58613 29 86.2 0 .......................A..TTA | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.9 32 GTGTTCCCCGTGTATACGGGGATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGCATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCCCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTAAATATAATTAGA # Right flank : ATCATCAAGTCTTCTCTCTTACTTGGCATTTATGCAGAGATGAATTTTTATATTTATTATCCGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGGTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGTTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCAGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Alternate repeat : GTGTTCCCCGTGCATACGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //